Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   HCX54_RS02120 Genome accession   NZ_CP053034
Coordinates   348949..349422 (+) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain abYQ4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 343949..354422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCX54_RS02095 (HCX54_02090) - 344413..346518 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  HCX54_RS02100 (HCX54_02095) - 346558..346687 (-) 130 Protein_311 hypothetical protein -
  HCX54_RS02105 (HCX54_02100) rpoZ 346726..347004 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HCX54_RS02110 (HCX54_02105) gmk 347077..347706 (-) 630 WP_000015937.1 guanylate kinase -
  HCX54_RS02115 (HCX54_02110) ispH 347829..348779 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HCX54_RS02120 (HCX54_02115) fimU 348949..349422 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HCX54_RS02125 (HCX54_02120) pilV 349416..349976 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  HCX54_RS02130 (HCX54_02125) pilW 349977..350978 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  HCX54_RS02135 (HCX54_02130) pilX 350975..351793 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=442339 HCX54_RS02120 WP_001214061.1 348949..349422(+) (fimU) [Acinetobacter baumannii strain abYQ4]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=442339 HCX54_RS02120 WP_001214061.1 348949..349422(+) (fimU) [Acinetobacter baumannii strain abYQ4]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987