Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   HCX54_RS02010 Genome accession   NZ_CP053034
Coordinates   323662..324189 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain abYQ4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 318662..329189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCX54_RS01995 (HCX54_01990) pilM 321215..322273 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  HCX54_RS02000 (HCX54_01995) pilN 322273..322914 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  HCX54_RS02005 (HCX54_02000) pilO 322911..323651 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  HCX54_RS02010 (HCX54_02005) pilP 323662..324189 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  HCX54_RS02015 (HCX54_02010) pilQ 324257..326422 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  HCX54_RS02020 (HCX54_02015) aroK 326434..327003 (+) 570 WP_000643712.1 shikimate kinase AroK -
  HCX54_RS02025 (HCX54_02020) aroB 327032..328114 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  HCX54_RS02030 (HCX54_02025) - 328130..329005 (+) 876 WP_000218802.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=442336 HCX54_RS02010 WP_000695065.1 323662..324189(+) (pilP) [Acinetobacter baumannii strain abYQ4]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=442336 HCX54_RS02010 WP_000695065.1 323662..324189(+) (pilP) [Acinetobacter baumannii strain abYQ4]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714