Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IRJ28_RS21435 Genome accession   NZ_CP064096
Coordinates   4082733..4083866 (+) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain N1142-3at     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 4077733..4088866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS21405 ywmC 4078530..4079213 (+) 684 WP_003227700.1 VWA domain-containing protein -
  IRJ28_RS21410 - 4079344..4079484 (+) 141 WP_003227702.1 hypothetical protein -
  IRJ28_RS21415 ywmD 4079537..4080211 (+) 675 WP_003243553.1 VWA domain-containing protein -
  IRJ28_RS21420 - 4080305..4080466 (+) 162 WP_003227706.1 hypothetical protein -
  IRJ28_RS21425 fdhD 4080712..4081500 (+) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  IRJ28_RS21430 moaA 4081516..4082541 (+) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  IRJ28_RS21435 rapC 4082733..4083866 (+) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  IRJ28_RS21440 - 4084022..4084501 (+) 480 WP_003244390.1 hypothetical protein -
  IRJ28_RS21445 csbD 4084574..4084762 (+) 189 WP_003227718.1 stress response protein CsbD -
  IRJ28_RS22170 - 4084975..4085143 (+) 169 Protein_4173 urea ABC transporter substrate-binding protein -
  IRJ28_RS21455 - 4085415..4085579 (+) 165 WP_015649919.1 hypothetical protein -
  IRJ28_RS21460 ureA 4085760..4086077 (+) 318 WP_003227724.1 urease subunit gamma -
  IRJ28_RS21465 ureB 4086074..4086448 (+) 375 WP_003227726.1 urease subunit beta -
  IRJ28_RS21470 ureC 4086445..4088154 (+) 1710 WP_003243090.1 urease subunit alpha -
  IRJ28_RS21475 ywnA 4088289..4088690 (+) 402 WP_003227734.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=442285 IRJ28_RS21435 WP_003227715.1 4082733..4083866(+) (rapC) [Bacillus subtilis strain N1142-3at]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=442285 IRJ28_RS21435 WP_003227715.1 4082733..4083866(+) (rapC) [Bacillus subtilis strain N1142-3at]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAACTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424