Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   DB356_RS01915 Genome accession   NZ_CP053030
Coordinates   414261..416480 (-) Length   739 a.a.
NCBI ID   WP_010437554.1    Uniprot ID   -
Organism   Pseudomonas congelans strain 508     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 409261..421480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DB356_RS01895 (DB356_02085) hslU 409641..410978 (-) 1338 WP_003316641.1 ATP-dependent protease ATPase subunit HslU -
  DB356_RS01900 (DB356_02090) hslV 411045..411575 (-) 531 WP_003392345.1 ATP-dependent protease subunit HslV -
  DB356_RS01905 (DB356_02095) - 411730..412425 (-) 696 WP_002551645.1 SPOR domain-containing protein -
  DB356_RS01910 (DB356_02100) argS 412427..414163 (-) 1737 WP_214423543.1 arginine--tRNA ligase -
  DB356_RS01915 (DB356_02105) priA 414261..416480 (-) 2220 WP_010437554.1 primosomal protein N' Machinery gene
  DB356_RS01920 (DB356_02110) rpmE 416650..416871 (+) 222 WP_002551648.1 50S ribosomal protein L31 -
  DB356_RS01925 (DB356_02115) - 416885..417688 (+) 804 WP_214423544.1 thermonuclease family protein -
  DB356_RS01930 (DB356_02120) - 418044..419312 (+) 1269 WP_003365988.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 81914.24 Da        Isoelectric Point: 8.5462

>NTDB_id=442282 DB356_RS01915 WP_010437554.1 414261..416480(-) (priA) [Pseudomonas congelans strain 508]
MPDAILRLALPSPLRRLFDYRAPAGVTRSALQPGMRLRVPFGRREMIGILVEVVDHSEVPADKLKPAIALLDSEAPLPPA
LFKLCLWTSQYYQHSLGDTLSWALPVLLRQGELAESRQERFWHVAPGASVDDPRIARAPKQREALTTLAQHPHGVAHQLL
SKLMLNKDSLNLLLAKELVYVEVRSHAPSARHEHWLAQPELPLNTEQRAAYEAIRAGFDSFHAFLLAGVTGSGKTEVYLQ
LIRETLEAGKQALVLIPEINLGPQTLARFEQRFNARIALVHSAVNDRERLDAWLAARDGEADIIIGTRSALFTPMKNPGL
IIIDEEHDGSYKQQEGLRYHARDLALVRARQENIPIVLGSATPSLESLHNAYTGRYGLLRLNQRAGGAQQPRFMRLDVKS
RPLDSGISGPMQQAIGQTLAAGQQVLVFLNRRGFAPTLLCHDCGWMSGCQRCDARMTVHQRSGELRCHHCGYVERVPRQC
PSCGKVDLRPVGAGTERAEERLAILFPDYPVLRVDRDSTSRKDAMNQLFTTIQRGQPCILVGTQMLAKGHHFPRVTLVSI
LDADGGLFSGDFRASERMAQLIVQVAGRAGRAEEPGKVIIQTHLADHPLLIQLTEQGYFAFAEQALSERRSAGLPPFSHL
ALLRAEAHKPGQAEAFLDQACSDAEQLVTQMALGGIELLGPVPAPMERRAGRYRAQLLVQSSARAPLHKLLATWLLALEQ
MPSGRQVRWSLDVDPVDLY

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=442282 DB356_RS01915 WP_010437554.1 414261..416480(-) (priA) [Pseudomonas congelans strain 508]
GTGCCCGACGCCATCCTGCGCCTTGCCCTGCCCTCGCCGCTTCGCCGCCTGTTCGACTACCGCGCTCCTGCGGGCGTGAC
GCGCAGCGCCTTGCAGCCGGGCATGCGTCTGCGAGTGCCGTTCGGACGCCGGGAAATGATCGGCATTCTGGTGGAAGTGG
TCGATCACAGCGAAGTGCCTGCCGACAAGCTCAAGCCGGCTATCGCCCTACTCGACAGCGAAGCGCCGCTGCCACCCGCG
CTGTTCAAACTGTGCCTGTGGACATCGCAGTACTACCAGCACAGCCTCGGCGACACACTGAGCTGGGCCCTGCCGGTGCT
GCTGCGTCAGGGCGAACTGGCCGAAAGTCGCCAGGAACGCTTCTGGCACGTGGCCCCGGGCGCCAGCGTCGATGATCCGC
GCATCGCCCGCGCGCCCAAGCAGCGCGAAGCCCTGACCACCCTTGCTCAGCACCCGCACGGGGTGGCGCATCAACTGCTC
AGCAAGCTGATGCTGAACAAGGACAGTCTCAACCTGTTGCTGGCCAAGGAGCTGGTGTACGTCGAGGTCCGCAGCCATGC
GCCCAGCGCACGCCATGAACACTGGCTGGCCCAGCCTGAATTGCCTCTCAACACCGAACAACGCGCCGCTTACGAAGCGA
TCCGCGCCGGGTTCGACAGCTTTCATGCGTTCCTGCTGGCCGGCGTCACCGGCAGCGGCAAGACCGAAGTCTATCTGCAG
CTGATCCGCGAAACCCTCGAAGCCGGCAAGCAGGCGCTGGTACTGATCCCGGAAATCAACCTCGGCCCGCAGACTCTGGC
GCGCTTCGAGCAACGCTTCAATGCGCGCATTGCGCTGGTCCACTCGGCGGTCAACGACCGCGAACGGCTGGATGCCTGGC
TGGCGGCTCGCGATGGCGAGGCGGACATCATCATCGGCACGCGTTCGGCGCTGTTCACGCCGATGAAAAACCCCGGCCTG
ATCATCATCGACGAAGAACACGACGGCTCCTATAAACAGCAGGAAGGCCTGCGCTATCACGCCCGCGATCTGGCACTGGT
GCGGGCCCGTCAGGAAAACATTCCGATTGTCCTGGGCTCGGCCACGCCGTCCCTGGAAAGCCTGCACAACGCCTACACCG
GCCGCTACGGCTTGCTGCGCCTGAATCAGCGCGCGGGCGGCGCACAGCAGCCGCGCTTCATGCGCCTGGACGTCAAGAGC
CGACCGCTGGACAGCGGCATCTCCGGCCCCATGCAGCAGGCCATCGGCCAGACACTCGCGGCAGGCCAGCAGGTCTTGGT
ATTTCTCAACCGTCGCGGCTTTGCACCAACCTTGCTGTGCCACGACTGCGGCTGGATGTCCGGCTGCCAGCGCTGCGATG
CACGCATGACCGTGCACCAGCGCTCGGGCGAGCTGCGCTGCCATCACTGCGGGTATGTCGAGCGTGTACCGCGTCAGTGC
CCGTCGTGCGGCAAGGTGGATTTGCGCCCGGTAGGCGCGGGCACCGAGCGCGCCGAAGAGCGCCTGGCGATTCTGTTTCC
GGACTATCCCGTGCTGCGCGTCGACCGCGACAGCACGTCGCGCAAGGACGCCATGAACCAGTTGTTCACAACGATCCAGC
GCGGTCAGCCGTGCATTCTGGTCGGCACGCAAATGCTCGCCAAGGGCCATCACTTTCCCCGGGTCACGCTGGTATCGATT
CTGGACGCCGACGGCGGGCTGTTTTCCGGCGACTTCCGCGCCAGCGAGCGCATGGCGCAGCTGATCGTGCAGGTGGCAGG
CCGTGCCGGGCGGGCCGAGGAGCCTGGCAAGGTGATCATCCAGACTCACCTGGCCGACCATCCACTGCTGATCCAGCTGA
CCGAGCAAGGTTATTTCGCCTTTGCCGAGCAGGCCTTGAGCGAGCGCCGTTCCGCGGGGCTGCCACCGTTTTCACACCTC
GCACTGCTGCGCGCTGAAGCGCACAAACCGGGACAGGCCGAGGCCTTTCTCGATCAGGCCTGCAGCGATGCGGAGCAACT
GGTTACGCAAATGGCGCTGGGCGGCATCGAGCTGCTGGGCCCGGTTCCGGCACCGATGGAACGCCGCGCCGGGCGTTATC
GTGCGCAACTGCTGGTGCAGTCCAGCGCCCGCGCGCCTTTGCATAAATTGCTTGCCACCTGGCTGCTCGCGCTGGAGCAA
ATGCCCAGCGGTCGACAGGTCAGATGGTCGCTGGATGTGGATCCTGTGGATCTTTATTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(9-105)

Primosomal protein N C-terminal domain (PriA_C)

(636-735)

DEAD/DEAH box helicase (DEAD)

(207-367)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(449-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

47.844

100

0.48