Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   IRJ28_RS19525 Genome accession   NZ_CP064096
Coordinates   3705223..3706017 (+) Length   264 a.a.
NCBI ID   WP_003242676.1    Uniprot ID   C0SP91
Organism   Bacillus subtilis strain N1142-3at     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3700223..3711017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS19505 walR 3700465..3701172 (+) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -
  IRJ28_RS19510 walK 3701180..3703015 (+) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  IRJ28_RS19515 walH 3703005..3704372 (+) 1368 WP_003242498.1 WalRK two-component regulatory system regulator WalH -
  IRJ28_RS19520 walI 3704359..3705201 (+) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  IRJ28_RS19525 vicX 3705223..3706017 (+) 795 WP_003242676.1 MBL fold metallo-hydrolase Regulator
  IRJ28_RS19530 htrA 3706099..3707301 (+) 1203 WP_009969578.1 serine protease HtrC Regulator
  IRJ28_RS19535 - 3707321..3707449 (+) 129 WP_003242634.1 hypothetical protein -
  IRJ28_RS19540 - 3707566..3707754 (+) 189 Protein_3789 ATP-binding protein -
  IRJ28_RS19545 rocR 3707736..3709121 (-) 1386 WP_003244510.1 arginine utilization regulatory protein RocR -
  IRJ28_RS19550 rocD 3709362..3710567 (+) 1206 WP_003242970.1 ornithine aminotransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29256.25 Da        Isoelectric Point: 5.8036

>NTDB_id=442276 IRJ28_RS19525 WP_003242676.1 3705223..3706017(+) (vicX) [Bacillus subtilis strain N1142-3at]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYSGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=442276 IRJ28_RS19525 WP_003242676.1 3705223..3706017(+) (vicX) [Bacillus subtilis strain N1142-3at]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCAATGGAGAC
GGTGAAGTCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTTTCCCACGATGCGGCGGAACCGATGTTTTATGTATTCC
ATTATAGCGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTATTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGAAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACCGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0SP91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53