Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   DBV21_RS01960 Genome accession   NZ_CP053029
Coordinates   425900..428119 (-) Length   739 a.a.
NCBI ID   WP_214348696.1    Uniprot ID   -
Organism   Pseudomonas congelans strain TLP2     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 420900..433119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBV21_RS01940 (DBV21_02090) hslU 421280..422617 (-) 1338 WP_003316641.1 ATP-dependent protease ATPase subunit HslU -
  DBV21_RS01945 (DBV21_02095) hslV 422684..423214 (-) 531 WP_003392345.1 ATP-dependent protease subunit HslV -
  DBV21_RS01950 (DBV21_02100) - 423369..424064 (-) 696 WP_002551645.1 SPOR domain-containing protein -
  DBV21_RS01955 (DBV21_02105) argS 424066..425802 (-) 1737 WP_214348693.1 arginine--tRNA ligase -
  DBV21_RS01960 (DBV21_02110) priA 425900..428119 (-) 2220 WP_214348696.1 primosomal protein N' Machinery gene
  DBV21_RS01965 (DBV21_02115) rpmE 428289..428510 (+) 222 WP_002551648.1 50S ribosomal protein L31 -
  DBV21_RS01970 (DBV21_02120) - 428524..429327 (+) 804 WP_214348699.1 thermonuclease family protein -
  DBV21_RS01975 (DBV21_02125) - 429683..430951 (+) 1269 WP_003365988.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 81831.15 Da        Isoelectric Point: 8.5462

>NTDB_id=442252 DBV21_RS01960 WP_214348696.1 425900..428119(-) (priA) [Pseudomonas congelans strain TLP2]
MPDAILRLALPSPLRRLFDYRAPAGVTRSALQPGMRLRVPFGRREMIGILVEVVDHSEVPADKLKPAIALLDSEAPLPAA
LFKLCLWTSQYYQHSLGDTLSWALPVLLRQGELAESRQERFWHVAPGASVDDPRIARAPKQREALTTLAQHPHGVAHQLL
SKLMLSKDSLNLLLAKELVYVEVRSHAPSARHEHWLAQPELPLNTEQRAAYEAIRAGFDSFHAFLLAGVTGSGKTEVYLQ
LIRETLEAGKQALVLIPEINLGPQTLARFEQRFNARIALVHSAVNDRERLDAWLAARDGEADIIIGTRSALFTPMKNPGL
IIIDEEHDGSYKQQEGLRYHARDLALVRARQENIPIVLGSATPSLESLHNAYTGRYGLLRLNQRAGGAQQPRFMRLDVKS
RPLDSGISGPMQQAIGQTLAAGQQVLVFLNRRGFAPTLLCHDCGWMSGCQRCDARMTVHQRSGELRCHHCGYVERVPRQC
PSCGKVDLRPVGAGTERAEERLAILFPDYPVLRVDRDSTSRKDAMNQLFTTIQRGQPCILVGTQMLAKGHHFPRVTLVSI
LDADGGLFSGDFRASERMAQLIVQVAGRAGRAEEPGKVIIQTHLADHPLLIQLTEQGYFAFAEQALSERRSAGLPPFSHL
ALLRAEAHKPGQAEAFLDQACSDAEQLVAQMALGGIELLGPVPAPMERRAGRYRAQLLVQSSARAPLHKLLATWLLALEQ
MPSGRQVRWSLDVDPVDLY

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=442252 DBV21_RS01960 WP_214348696.1 425900..428119(-) (priA) [Pseudomonas congelans strain TLP2]
GTGCCCGACGCCATCCTGCGCCTTGCCCTGCCCTCGCCGCTTCGCCGCCTGTTCGACTACCGCGCCCCTGCGGGCGTGAC
GCGCAGCGCCTTGCAGCCGGGCATGCGTCTGCGAGTGCCGTTCGGACGCCGGGAAATGATCGGCATTCTGGTGGAAGTGG
TCGATCACAGCGAAGTGCCCGCCGACAAGCTCAAGCCGGCTATCGCCCTGCTCGACAGCGAAGCGCCGCTGCCAGCCGCG
CTGTTCAAGCTGTGCCTGTGGACATCGCAGTACTACCAGCACAGCCTCGGGGACACACTGAGCTGGGCCCTGCCGGTGCT
GCTGCGTCAGGGCGAACTGGCCGAAAGTCGCCAGGAACGCTTCTGGCACGTGGCCCCGGGCGCCAGCGTCGATGATCCGC
GCATCGCCCGCGCGCCCAAGCAGCGCGAAGCCCTGACCACCCTTGCCCAGCACCCGCACGGGGTGGCGCATCAACTGCTC
AGCAAGCTGATGCTGAGCAAGGACAGTCTCAACCTGTTGCTGGCCAAGGAGCTGGTGTACGTCGAGGTCCGCAGCCATGC
GCCCAGCGCACGCCATGAACACTGGCTGGCCCAGCCTGAATTGCCGCTCAACACCGAACAACGCGCCGCTTACGAAGCGA
TCCGCGCCGGGTTCGACAGCTTTCATGCGTTCCTGCTGGCCGGCGTGACGGGCAGCGGCAAGACCGAAGTCTATCTGCAA
CTGATCCGTGAAACCCTCGAAGCCGGCAAGCAGGCGCTGGTACTGATCCCGGAAATCAACCTCGGCCCGCAGACCCTGGC
GCGCTTCGAGCAACGCTTCAATGCGCGCATTGCGCTGGTCCACTCGGCGGTCAACGACCGCGAACGACTGGATGCCTGGC
TGGCGGCCCGCGATGGCGAGGCGGACATCATCATCGGCACGCGTTCGGCGCTGTTCACGCCGATGAAAAACCCCGGCCTG
ATCATCATCGACGAAGAACACGACGGCTCCTATAAACAGCAGGAAGGTCTGCGCTATCACGCCCGCGATCTGGCGCTGGT
GCGGGCGCGCCAGGAAAACATTCCGATTGTCCTTGGCTCGGCCACGCCGTCCCTGGAAAGCCTGCACAACGCCTACACCG
GCCGCTACGGCCTGCTGCGCCTGAATCAGCGCGCGGGCGGCGCACAGCAGCCGCGCTTCATGCGCCTGGACGTCAAGAGC
CGACCGCTGGACAGCGGCATCTCCGGCCCCATGCAGCAGGCCATCGGCCAGACACTCGCGGCAGGCCAGCAGGTCTTGGT
GTTTCTCAACCGTCGCGGCTTTGCACCAACCCTGCTGTGCCACGACTGCGGCTGGATGTCCGGCTGCCAGCGCTGCGATG
CACGCATGACCGTGCACCAGCGCTCGGGCGAGCTGCGCTGCCATCACTGCGGGTATGTCGAGCGTGTACCGCGTCAGTGT
CCGTCGTGCGGCAAGGTGGATTTGCGCCCGGTAGGCGCGGGCACCGAGCGCGCCGAAGAGCGCCTGGCGATTCTGTTTCC
GGACTATCCCGTGCTGCGCGTCGACCGCGACAGCACGTCGCGCAAGGACGCCATGAACCAGCTGTTCACAACGATCCAGC
GCGGTCAGCCGTGCATTCTGGTCGGCACGCAAATGCTTGCCAAGGGCCATCACTTTCCCCGGGTCACGCTGGTATCGATT
CTGGACGCCGACGGCGGGCTGTTTTCCGGCGACTTCCGCGCCAGCGAGCGCATGGCGCAACTGATCGTGCAGGTGGCAGG
CCGTGCCGGGCGGGCCGAGGAGCCTGGCAAGGTGATCATCCAGACTCACCTGGCCGACCATCCACTGCTGATCCAGCTGA
CCGAGCAAGGTTATTTCGCCTTTGCCGAGCAGGCCTTGAGCGAGCGCCGTTCCGCGGGTCTGCCACCGTTTTCACACCTC
GCCCTGCTGCGCGCCGAAGCGCACAAGCCGGGACAGGCCGAGGCCTTTCTCGATCAGGCCTGCAGCGATGCGGAGCAACT
GGTTGCGCAGATGGCGCTTGGCGGCATTGAGCTGCTGGGCCCGGTTCCGGCACCGATGGAACGCCGCGCCGGGCGTTATC
GTGCGCAACTGCTGGTGCAGTCCAGCGCCCGCGCGCCCTTGCATAAATTGCTTGCCACCTGGCTGCTCGCGCTGGAGCAA
ATGCCCAGCGGTCGACAGGTCAGATGGTCGCTGGATGTGGATCCTGTGGATCTTTATTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(9-105)

Primosomal protein N C-terminal domain (PriA_C)

(636-735)

DEAD/DEAH box helicase (DEAD)

(207-367)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(449-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

47.844

100

0.48