Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   IRJ28_RS13215 Genome accession   NZ_CP064096
Coordinates   2491196..2494588 (-) Length   1130 a.a.
NCBI ID   WP_003245201.1    Uniprot ID   O06714
Organism   Bacillus subtilis strain N1142-3at     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2486196..2499588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS13170 yisJ 2487248..2488171 (+) 924 WP_003245291.1 CotH kinase family protein -
  IRJ28_RS13175 yisI 2488317..2488487 (+) 171 WP_003233086.1 aspartyl-phosphate phosphatase YisI -
  IRJ28_RS13180 gerPA 2488910..2489131 (+) 222 WP_003233088.1 spore germination protein -
  IRJ28_RS13185 gerPB 2489146..2489379 (+) 234 WP_003233090.1 spore germination protein GerPB -
  IRJ28_RS13190 gerPC 2489402..2490019 (+) 618 WP_003245548.1 spore germination protein GerPC -
  IRJ28_RS13195 gerPD 2490016..2490192 (+) 177 WP_003233093.1 spore germination protein GerPD -
  IRJ28_RS13200 gerPE 2490192..2490593 (+) 402 WP_010886467.1 spore germination protein GerPE -
  IRJ28_RS13205 gerPF 2490625..2490843 (+) 219 WP_003233096.1 spore germination protein -
  IRJ28_RS13210 hlpB 2490880..2491182 (-) 303 WP_003245113.1 HNH nuclease-like protein HlpB -
  IRJ28_RS13215 sbcC 2491196..2494588 (-) 3393 WP_003245201.1 exonuclease subunit SbcC Machinery gene
  IRJ28_RS13220 sbcD 2494585..2495760 (-) 1176 WP_003233099.1 exonuclease subunit SbcD -
  IRJ28_RS13225 addA 2495832..2499530 (-) 3699 WP_003233100.1 helicase-exonuclease AddAB subunit AddA Machinery gene

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128920.56 Da        Isoelectric Point: 5.3147

>NTDB_id=442226 IRJ28_RS13215 WP_003245201.1 2491196..2494588(-) (sbcC) [Bacillus subtilis strain N1142-3at]
MKPIALSIKGLHSFREEQTIDFEGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDTLSVSFTF
ALQTNHQISYKVERVFKRTDEMKVKTALCRFIEIKDEHTVLADKASEVNKRVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRQAQEANARKNEMLAEQSGLGEASSEAVEQAEKVLEQAEARLEAMRKNRDQAK
ERFTEHQEIWNVQKEKSTYEEEEKRLAEEQPHIDSMQKRLLEAETAAALKPYADRYAEAIQHEEQAEKEQTLAQKDLADR
TAFFQQKHEEYEAWRQHKSEKEPELLAKQEQLSRLQEIEIKLSEAKQEEERKKADLRQKEEALQSVMNELETVTDRLTRG
QNRQTELKQQLKSLQVTSDERKSCQQAAEMALRIRQTEEQIKKEKKRSEELNLVLQKMNEEKNTLVQKTEAEENNIIQAY
EAVQTVYHLVCETERSLTRMTEEARKSQHTLHLQREKARVALLTKELAQKLTAGKPCPVCGSTDHDPSASVHETYEADSH
LEEDIKRTDVLLTEAAALSQEILSAKIMLEEQSARFIEQCPFLQTIQAQNLEAAASFEHQPVYEAFETAKFEWKRIKQDI
LSVKTRMAQMIGAYQESLKKAEQLNEKIGFEKREADRIESIISELQSSMDSSLNMFKEAFQNQSVDEAEKWQQAIEEKDR
AAEECEKRIEKSIAFLAEHEAQKEKLRESGHRLEREKLELHYAAERIKSVIADYEHELGDYAKGDSIQIKLRSVQQDLKL
LKEKEQSLYEELQSAQMKLNQAKSRASASELTLQEAKGRLEKAKAAWLEHTKNTSITRTEEVEQSLIPADELEKMKTGID
QFMDKLKQNAANLKRVAEILAGRALSESEWNETVAALQEAEDAFGAAIEEKGAAAKALAVIRDHHKRFNEIEAELKKWQM
HIDRLDKLQAVFKGNTFVEFLAEEQLESVARDASARLSMLTRQRYAIEVDSEGGFVMRDDANGGVRRPVSSLSGGETFLT
SLSLALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQSDNLAVGVISHVQELRARLPKKLIVHPAEPSG
RGTRVSLELM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=442226 IRJ28_RS13215 WP_003245201.1 2491196..2494588(-) (sbcC) [Bacillus subtilis strain N1142-3at]
ATGAAGCCGATCGCCTTAAGCATTAAGGGGCTCCACAGCTTTAGAGAGGAGCAGACGATAGATTTTGAAGGCCTTTCCGG
TGCCGGTGTTTTCGGCATTTTCGGCCCGACAGGAAGCGGTAAATCCTCTATACTCGACGCAATGACGCTTGCTTTATACG
GAAAGGTGGAACGGGCGGCGAATAATACGCACGGAATCTTAAATCACGCCGAAGATACGCTGTCTGTGTCCTTTACCTTT
GCGCTTCAGACGAATCACCAAATCTCATACAAAGTCGAGCGTGTGTTTAAGAGAACGGATGAAATGAAGGTAAAAACGGC
ACTTTGCCGCTTCATCGAAATCAAGGACGAGCATACGGTGCTGGCTGATAAAGCCAGCGAAGTGAATAAAAGAGTGGAGG
AGCTCTTAGGGCTGACGATCGACGATTTTACGAGAGCGGTGGTGCTGCCCCAAGGGAAATTTGCTGAATTTCTGTCTTTA
AAAGGGGCAGAGCGCAGGCATATGCTTCAGCGTTTATTTAATTTGGAGCAATATGGAGACAGGCTTGTGAAAAAGCTGAG
ACGGCAGGCGCAGGAAGCCAATGCGAGAAAAAATGAAATGCTTGCTGAACAGTCCGGTCTCGGTGAGGCGAGCTCAGAGG
CAGTGGAGCAGGCTGAAAAGGTTCTCGAACAAGCTGAAGCCCGGCTGGAAGCGATGAGGAAGAACCGTGATCAGGCGAAG
GAGCGGTTTACAGAGCATCAGGAGATATGGAATGTCCAAAAGGAAAAATCCACTTATGAAGAAGAGGAAAAACGTCTCGC
AGAAGAACAGCCGCATATAGACAGCATGCAAAAACGCCTGCTGGAAGCAGAAACAGCAGCAGCCCTTAAGCCCTATGCGG
ACCGGTACGCAGAAGCGATCCAGCATGAGGAGCAAGCTGAAAAGGAACAAACGCTAGCCCAAAAGGATTTAGCAGACCGG
ACAGCTTTCTTTCAGCAAAAACATGAAGAGTATGAAGCGTGGCGCCAGCATAAAAGCGAGAAAGAGCCTGAGCTTTTAGC
CAAACAGGAACAGCTTTCACGCTTGCAGGAAATCGAAATCAAACTGAGTGAGGCCAAGCAAGAGGAAGAGCGCAAAAAGG
CTGACCTCCGGCAGAAAGAAGAGGCTCTTCAATCTGTCATGAATGAATTAGAGACCGTAACAGACCGCCTGACACGAGGG
CAAAACAGACAGACAGAATTGAAGCAGCAGCTCAAATCCCTGCAGGTGACATCCGATGAGCGAAAAAGCTGCCAGCAGGC
CGCAGAGATGGCATTGCGCATCAGACAAACCGAGGAACAAATCAAAAAAGAGAAAAAACGAAGTGAAGAATTGAACCTCG
TGCTGCAGAAGATGAATGAAGAGAAGAATACACTCGTTCAAAAGACGGAAGCGGAAGAAAACAACATCATTCAGGCATAT
GAGGCAGTTCAAACTGTGTACCATTTGGTGTGCGAAACGGAACGCTCATTAACACGTATGACGGAAGAGGCTAGAAAGAG
TCAACACACGCTTCACTTACAGCGTGAAAAAGCAAGGGTGGCACTGCTGACAAAAGAGTTAGCCCAAAAGCTGACTGCCG
GAAAGCCTTGCCCGGTATGCGGTTCAACCGATCATGATCCATCTGCCTCGGTACATGAAACGTATGAAGCCGACAGCCAT
CTTGAAGAGGACATCAAACGGACAGATGTGTTATTGACGGAAGCTGCAGCTCTCAGCCAGGAGATTCTTTCAGCCAAAAT
TATGCTTGAAGAACAGTCCGCGCGCTTTATTGAACAGTGTCCGTTTTTGCAGACAATTCAAGCACAGAACCTTGAAGCGG
CAGCTTCCTTCGAACATCAGCCGGTGTATGAAGCATTTGAAACTGCCAAATTTGAATGGAAACGAATCAAGCAGGACATT
CTTTCTGTTAAGACACGAATGGCACAAATGATTGGCGCCTATCAGGAGTCTTTAAAAAAGGCCGAGCAGCTTAATGAAAA
AATCGGTTTTGAAAAAAGAGAAGCCGACCGTATTGAAAGCATCATCAGTGAGCTTCAATCCTCAATGGACAGCAGTCTGA
ACATGTTTAAAGAAGCATTTCAGAATCAATCTGTGGACGAAGCAGAAAAATGGCAGCAAGCCATTGAAGAAAAGGACCGG
GCTGCAGAAGAATGTGAAAAACGAATTGAGAAGAGTATCGCGTTTCTTGCTGAGCATGAAGCACAAAAGGAAAAACTGCG
GGAATCGGGACACCGGCTTGAGCGGGAAAAGCTGGAGCTTCATTATGCGGCTGAACGCATCAAGAGCGTGATAGCTGATT
ATGAGCACGAACTCGGAGATTATGCAAAAGGAGATTCGATTCAAATCAAACTCCGCTCTGTCCAGCAGGATCTAAAGCTG
TTAAAGGAAAAAGAACAATCTTTATATGAAGAACTGCAAAGCGCCCAAATGAAGCTCAACCAAGCGAAAAGCCGCGCTTC
TGCAAGCGAGCTCACTCTTCAAGAGGCGAAGGGCAGATTGGAAAAAGCAAAAGCTGCTTGGCTTGAGCATACAAAAAACA
CCTCCATTACCCGGACTGAGGAGGTTGAACAAAGTCTCATCCCAGCTGATGAACTTGAAAAGATGAAAACCGGCATAGAC
CAGTTTATGGATAAACTGAAGCAAAATGCTGCAAACTTAAAACGAGTAGCAGAGATACTTGCCGGCAGAGCATTATCAGA
GAGCGAATGGAACGAAACCGTTGCAGCATTACAAGAAGCTGAGGACGCATTTGGCGCTGCTATAGAGGAAAAAGGCGCGG
CCGCAAAAGCACTGGCTGTCATTCGCGACCATCATAAACGGTTTAATGAAATTGAAGCTGAACTGAAAAAATGGCAGATG
CATATCGACAGGCTGGACAAGCTGCAAGCTGTGTTTAAAGGCAATACCTTCGTCGAATTTTTAGCTGAGGAGCAGCTTGA
AAGCGTTGCGAGGGACGCCTCAGCAAGACTCAGTATGCTGACAAGACAGCGCTATGCCATCGAAGTAGATTCTGAGGGCG
GCTTCGTGATGCGGGATGACGCGAATGGAGGCGTACGACGCCCGGTTTCCAGTTTGTCTGGAGGAGAGACCTTCCTCACC
TCGCTTTCACTTGCTCTTGCGCTGTCTGCGCAGATTCAGCTTCGGGGGGAATACCCGCTGCAGTTCTTTTTCTTAGATGA
AGGCTTCGGCACACTGGATCAAGATCTGCTTGATACGGTTGTAACGGCCTTGGAAAAACTTCAGTCAGACAACCTGGCTG
TCGGTGTCATCAGCCATGTGCAGGAACTGCGTGCACGGCTTCCGAAAAAGCTGATCGTCCATCCGGCTGAACCGAGCGGC
CGCGGTACGCGGGTATCACTTGAGTTGATGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(6-235)

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1002-1085)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O06714

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

100

100

1