Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   IRJ28_RS10880 Genome accession   NZ_CP064096
Coordinates   2070464..2070913 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain N1142-3at     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2065464..2075913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS10850 sepM 2065543..2066568 (-) 1026 WP_003245451.1 protease DdcP Regulator
  IRJ28_RS10855 ylbK 2066570..2067352 (-) 783 WP_003232221.1 patatin family protein -
  IRJ28_RS10860 spoVV 2067533..2068759 (+) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  IRJ28_RS10865 coaD 2068770..2069255 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  IRJ28_RS10870 rsmD 2069260..2069814 (-) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  IRJ28_RS10875 ylbG 2070137..2070409 (-) 273 WP_009967171.1 YlbG family protein -
  IRJ28_RS10880 ylbF 2070464..2070913 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  IRJ28_RS10885 ylbE 2071029..2071268 (-) 240 WP_003232231.1 YlbE-like family protein -
  IRJ28_RS10890 ylbD 2071284..2071682 (-) 399 WP_003232233.1 YlbD family protein -
  IRJ28_RS10895 ylbC 2071914..2072954 (-) 1041 WP_003245434.1 CAP domain-containing protein -
  IRJ28_RS10900 ylbB 2073038..2073484 (-) 447 WP_003221362.1 CBS domain-containing protein -
  IRJ28_RS10905 ylbA 2073624..2073986 (+) 363 WP_003232238.1 YugN family protein -
  IRJ28_RS10910 ctaG 2074018..2074911 (-) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  IRJ28_RS10915 ctaF 2074938..2075270 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  IRJ28_RS10920 ctaE 2075273..2075896 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=442205 IRJ28_RS10880 WP_003221370.1 2070464..2070913(-) (ylbF) [Bacillus subtilis strain N1142-3at]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=442205 IRJ28_RS10880 WP_003221370.1 2070464..2070913(-) (ylbF) [Bacillus subtilis strain N1142-3at]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1