Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   IRJ28_RS05440 Genome accession   NZ_CP064096
Coordinates   1029623..1030390 (+) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   P42095
Organism   Bacillus subtilis strain N1142-3at     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1024623..1035390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS05410 pgpH 1024919..1027054 (+) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -
  IRJ28_RS05415 ybeY 1027055..1027528 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  IRJ28_RS05420 unpK 1027509..1027880 (+) 372 WP_004398824.1 diacylglycerol kinase family protein -
  IRJ28_RS05425 cdd 1027999..1028409 (+) 411 WP_003230049.1 cytidine deaminase -
  IRJ28_RS05430 era 1028390..1029295 (+) 906 WP_003230051.1 GTPase Era -
  IRJ28_RS05435 yqzL 1029443..1029586 (+) 144 WP_003230053.1 YqzL family protein -
  IRJ28_RS05440 recO 1029623..1030390 (+) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  IRJ28_RS05445 glyQ 1030687..1031574 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  IRJ28_RS05450 glyS 1031567..1033606 (+) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  IRJ28_RS05455 ccpN 1033739..1034377 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  IRJ28_RS05460 ppsR 1034403..1035215 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=442169 IRJ28_RS05440 WP_003230055.1 1029623..1030390(+) (recO) [Bacillus subtilis strain N1142-3at]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=442169 IRJ28_RS05440 WP_003230055.1 1029623..1030390(+) (recO) [Bacillus subtilis strain N1142-3at]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42095

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1