Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IRJ28_RS05145 Genome accession   NZ_CP064096
Coordinates   978996..980123 (-) Length   375 a.a.
NCBI ID   WP_004398842.1    Uniprot ID   P45943
Organism   Bacillus subtilis strain N1142-3at     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 973996..985123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS05110 - 974928..975407 (+) 480 WP_004399085.1 hypothetical protein -
  IRJ28_RS05115 - 975423..975785 (+) 363 WP_003229947.1 hypothetical protein -
  IRJ28_RS05120 - 975782..975928 (-) 147 WP_009967791.1 hypothetical protein -
  IRJ28_RS05125 yqcF 976046..976624 (-) 579 WP_009967790.1 type VII secretion system immunity protein YqcF -
  IRJ28_RS05130 yqcG 976639..978234 (-) 1596 WP_004399034.1 LXG family T7SS effector endonuclease toxin YqcG -
  IRJ28_RS05135 - 978604..978762 (-) 159 WP_003245945.1 hypothetical protein -
  IRJ28_RS05140 phrE 978872..979006 (-) 135 WP_004398770.1 phosphatase RapE inhibitor PhrE -
  IRJ28_RS05145 rapC 978996..980123 (-) 1128 WP_004398842.1 response regulator aspartate phosphatase RapE Regulator
  IRJ28_RS05150 yqcI 980566..981330 (+) 765 WP_004398670.1 YqcI/YcgG family protein -
  IRJ28_RS05155 arsR 981702..982019 (+) 318 WP_004399122.1 arsenical resistance operon transcriptional regulator ArsR -
  IRJ28_RS05160 yqcK 982080..982520 (+) 441 WP_003229954.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  IRJ28_RS05165 acr3 982543..983583 (+) 1041 WP_004398718.1 arsenite efflux transporter Acr3 -
  IRJ28_RS05170 arsC 983595..984014 (+) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  IRJ28_RS05175 - 984369..984547 (+) 179 Protein_1005 hypothetical protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44636.38 Da        Isoelectric Point: 7.3392

>NTDB_id=442164 IRJ28_RS05145 WP_004398842.1 978996..980123(-) (rapC) [Bacillus subtilis strain N1142-3at]
MISITSAEVGMKINEWHRHIQKFNVTDAEMLKAEIERDIEVMEEDQDLLIYYQLMAFRHKIMLEYTLPSDENRMELSEYL
NKIEGHKKKLDNMRAYYYNFFRGMYEFRNGEYTRAITYYKKAERKIPTISDKIEKAEFYFKLSEVYYHMKMTHISMHYAE
LSYNIYKKHELYSVRRIQCHFVIAGNYDDLENHEKALPHLQEALKGAELLKSKNTHIYATAFFNLGNCYHKMDNLNKAAR
YIEQALVQYRKINSDVLPQAYHDLALIYFKQGKKEQAMDCFRKGIRSAVDFKDELFMNLFEALDVLYIRNGDTPKLLNIF
SRLENGKGYPYLEELALLGGNLFDYNGKIEDSIICFKKMVYAQKQISKGECMYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=442164 IRJ28_RS05145 WP_004398842.1 978996..980123(-) (rapC) [Bacillus subtilis strain N1142-3at]
TTGATATCAATCACATCAGCTGAAGTGGGAATGAAGATTAATGAATGGCATAGGCATATTCAAAAATTCAACGTAACTGA
TGCTGAAATGTTAAAAGCTGAAATAGAACGTGATATAGAGGTTATGGAAGAAGATCAAGACTTGCTTATTTATTATCAAC
TAATGGCCTTTCGCCATAAAATTATGTTGGAATACACGCTGCCATCTGATGAAAACCGAATGGAACTTTCAGAATATTTA
AATAAAATTGAGGGCCATAAGAAAAAATTAGACAATATGCGGGCATATTATTATAACTTCTTCCGCGGGATGTATGAGTT
TAGAAACGGTGAATACACAAGAGCCATTACATATTACAAAAAAGCTGAACGCAAAATTCCTACAATCTCCGACAAGATTG
AAAAAGCTGAGTTTTATTTTAAACTGTCTGAAGTCTATTATCATATGAAAATGACACACATTTCGATGCATTACGCTGAG
CTTTCATACAACATTTATAAGAAACACGAGCTTTACTCTGTTCGTCGTATTCAGTGCCATTTTGTCATTGCCGGTAACTA
CGATGACCTTGAAAATCATGAAAAAGCTCTCCCCCACCTTCAAGAAGCTTTAAAAGGTGCCGAGCTGCTTAAAAGTAAAA
ATACTCATATCTATGCCACTGCGTTTTTCAATCTCGGCAATTGCTATCACAAAATGGACAACTTAAATAAGGCTGCTCGT
TACATCGAACAAGCCTTGGTTCAATACAGAAAAATTAACTCTGACGTACTTCCGCAAGCTTATCATGACCTAGCGTTGAT
TTATTTTAAACAAGGCAAAAAAGAACAAGCAATGGATTGCTTCCGCAAAGGAATCAGAAGTGCTGTAGATTTTAAAGACG
AACTATTTATGAACTTATTTGAAGCATTAGACGTTCTTTATATAAGAAATGGCGATACACCTAAACTTCTCAACATTTTT
TCTCGTTTAGAGAACGGCAAAGGATACCCTTATCTGGAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGG
AAAAATAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTCAAAAGCAAATATCGAAAGGGGAATGCATGTATG
AAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(184-246)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-64)

Tetratricopeptide repeat (TPR_8)

(259-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P45943

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.897

100

0.413
  rapF Bacillus subtilis subsp. subtilis str. 168

38.196

100

0.384