Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   IRJ27_RS09620 Genome accession   NZ_CP064095
Coordinates   1899002..1899232 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain N1303-2Ay     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1894002..1904232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ27_RS09610 spoVT 1894727..1895263 (-) 537 WP_003218365.1 stage V sporulation protein T -
  IRJ27_RS09615 mfd 1895399..1898932 (-) 3534 WP_003243453.1 transcription-repair coupling factor -
  IRJ27_RS09620 subA/fin 1899002..1899232 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  IRJ27_RS09625 pth 1899292..1899858 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  IRJ27_RS09630 ctc 1899965..1900579 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  IRJ27_RS09635 prs 1900664..1901617 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  IRJ27_RS09640 glmU 1901640..1903010 (-) 1371 WP_003226732.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  IRJ27_RS09645 spoVG 1903203..1903496 (-) 294 WP_003218346.1 septation regulator SpoVG -
  IRJ27_RS09650 ridA 1903690..1904067 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=442056 IRJ27_RS09620 WP_003243417.1 1899002..1899232(-) (subA/fin) [Bacillus subtilis strain N1303-2Ay]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=442056 IRJ27_RS09620 WP_003243417.1 1899002..1899232(-) (subA/fin) [Bacillus subtilis strain N1303-2Ay]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1