Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   HKJ34_RS01250 Genome accession   NZ_CP052936
Coordinates   248989..250788 (-) Length   599 a.a.
NCBI ID   WP_003584742.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain CLP-C10     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 243989..255788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKJ34_RS01225 (HKJ34_01240) - 245263..245607 (+) 345 WP_003563007.1 hypothetical protein -
  HKJ34_RS01230 (HKJ34_01245) - 245681..246400 (+) 720 WP_003563009.1 metal ABC transporter ATP-binding protein -
  HKJ34_RS01235 (HKJ34_01250) - 246397..247194 (+) 798 WP_003563011.1 metal ABC transporter permease -
  HKJ34_RS01240 (HKJ34_01255) - 247266..248114 (-) 849 WP_003584745.1 metallophosphoesterase family protein -
  HKJ34_RS01245 (HKJ34_01260) - 248111..248992 (-) 882 WP_004562160.1 NAD(P)-dependent oxidoreductase -
  HKJ34_RS01250 (HKJ34_01265) pepF 248989..250788 (-) 1800 WP_003584742.1 oligoendopeptidase F Regulator
  HKJ34_RS01255 (HKJ34_01270) - 250917..252011 (+) 1095 WP_003584740.1 LCP family protein -
  HKJ34_RS01260 (HKJ34_01275) brnQ 252236..253615 (-) 1380 WP_273646709.1 branched-chain amino acid transport system II carrier protein -
  HKJ34_RS01265 (HKJ34_01280) - 254501..255745 (-) 1245 WP_273646711.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67299.48 Da        Isoelectric Point: 5.8465

>NTDB_id=442038 HKJ34_RS01250 WP_003584742.1 248989..250788(-) (pepF) [Lacticaseibacillus paracasei strain CLP-C10]
MQHLPARAEVPTELTWDLTTIYPDDKAWQVDFEAVRQQAKEAAALKGTLGKSPEALVAGIKAVLAVFRRFEKVYVYSSLK
SDQDTGNAAYQAMNAKAESLAADLASQLAFMDPEIMAIPADQLTAWRDTESLKPYGHFIDAITVNRQHVLTTAAESLIAS
AGDALNASHATFNVLNNSDLQFGFVENEDGETVQLSNGLYGQLIRSTNRKLRKDAFEALLRAYESLKNTFAQTLSGQIKA
HNFNALAHHYPDARAAAMASNHIPESVYTTLLDQVNAHLPLLHRYIALRKKILNVDQLHMYDIYTPLTGRPPLSFTLDQA
KDEALKALAPLGNDYLDHMREIFNNRYIDVVENKGKRSGAYSGGAYDTNPFILLNWHDAVDELYTLVHETGHSVHSWYTR
HHQPYVYGDYPIFVAEIASTTNENLLTDYFLKNTNDPKVRAYILNYYLDGFKGTVFRQTQFADFEHWIHQQDQHGEPLTA
TSMSSYYADLNARYYGPDVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISGGEPEAVSRYIGYLKSGSSKY
AIDTMKAAGVDMTKPDYLEAAFSLFEQRLAELEKILQKG

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=442038 HKJ34_RS01250 WP_003584742.1 248989..250788(-) (pepF) [Lacticaseibacillus paracasei strain CLP-C10]
ATGCAACATTTACCGGCACGCGCAGAAGTCCCTACCGAATTGACATGGGATCTCACGACTATTTATCCAGATGACAAGGC
TTGGCAAGTTGACTTTGAAGCCGTTCGTCAGCAAGCAAAGGAAGCGGCAGCACTTAAGGGTACATTGGGCAAGTCGCCTG
AAGCACTTGTCGCAGGTATCAAAGCCGTTCTCGCGGTGTTCAGACGCTTTGAAAAGGTTTATGTCTATTCCAGCTTGAAA
AGTGATCAAGACACTGGCAATGCAGCGTATCAAGCCATGAATGCCAAAGCAGAAAGTCTGGCAGCTGATCTTGCCAGCCA
ATTAGCCTTCATGGATCCGGAAATTATGGCGATTCCAGCCGATCAGCTGACCGCTTGGCGCGATACCGAAAGCCTCAAAC
CCTATGGCCACTTTATTGATGCCATCACTGTGAATCGCCAACACGTCCTGACCACAGCGGCTGAGTCATTAATTGCCAGT
GCTGGGGATGCGCTGAATGCCAGTCATGCAACCTTTAATGTGTTGAACAACTCCGACCTGCAATTTGGCTTTGTTGAAAA
TGAAGACGGTGAGACCGTGCAACTCAGCAATGGTTTGTATGGTCAACTCATTCGGTCAACAAATCGCAAGCTGCGGAAAG
ACGCGTTTGAGGCTTTGCTACGGGCATATGAAAGTCTTAAGAATACCTTTGCTCAAACATTGAGTGGCCAGATCAAAGCT
CATAACTTCAATGCTTTAGCGCATCATTATCCCGATGCTCGCGCTGCTGCAATGGCAAGTAACCACATCCCCGAAAGTGT
CTACACAACACTGCTTGATCAAGTCAACGCTCACTTGCCATTACTACATCGCTATATTGCCTTACGTAAAAAGATTCTGA
ATGTCGATCAACTGCATATGTATGATATCTACACACCGCTGACCGGACGTCCGCCATTGAGTTTCACCCTCGATCAGGCA
AAAGACGAAGCCTTAAAGGCATTGGCTCCGCTGGGAAATGATTATTTAGATCATATGCGGGAAATCTTTAATAATCGTTA
CATTGATGTCGTCGAAAATAAGGGCAAACGGTCCGGCGCTTATTCCGGTGGCGCGTATGACACCAATCCGTTCATTTTAC
TGAACTGGCACGATGCCGTTGATGAATTGTACACTTTGGTTCACGAAACTGGTCACAGTGTGCACAGCTGGTACACTCGT
CATCACCAGCCTTACGTTTATGGCGACTACCCAATCTTCGTCGCAGAAATTGCCTCAACAACCAATGAAAATTTATTGAC
GGACTACTTCCTAAAAAACACCAATGATCCTAAAGTTCGGGCGTACATTTTGAATTACTATCTAGACGGCTTCAAAGGAA
CGGTCTTCCGTCAGACTCAATTTGCCGACTTTGAACATTGGATTCATCAACAAGACCAGCATGGTGAACCATTGACGGCT
ACCAGCATGTCCTCCTATTATGCGGATCTCAATGCCCGTTATTACGGACCAGATGTTGCACGTGATCCTGAAATCGCCTT
TGAATGGGCTCGTATTCCACATTTCTATTACAATTATTATGTTTACCAGTACGCAACTGGTTTTGCCGCTGCCTCGACTC
TGGCCGCCGGCATCAGCGGTGGCGAACCAGAGGCGGTTTCCCGCTATATCGGCTACTTGAAATCTGGCAGTTCCAAGTAT
GCGATTGATACAATGAAAGCGGCCGGCGTTGATATGACCAAGCCAGATTATTTAGAAGCCGCCTTCTCACTATTTGAACA
ACGACTCGCTGAATTAGAAAAAATTTTGCAGAAAGGATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.02

99.165

0.516