Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   IRJ27_RS07525 Genome accession   NZ_CP064095
Coordinates   1482889..1483323 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain N1303-2Ay     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1477889..1488323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ27_RS07510 epsK 1478518..1479369 (-) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -
  IRJ27_RS07515 - 1479350..1480438 (-) 1089 WP_003246551.1 lipoprotein -
  IRJ27_RS07520 topB 1480641..1482824 (-) 2184 WP_003246684.1 DNA topoisomerase III -
  IRJ27_RS07525 lrpC 1482889..1483323 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  IRJ27_RS07530 ydzA 1483508..1483798 (+) 291 WP_003246602.1 DUF3817 domain-containing protein -
  IRJ27_RS07535 amj 1483842..1484651 (-) 810 WP_003234394.1 lipid II flippase Amj -
  IRJ27_RS07540 ydaG 1485157..1485579 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  IRJ27_RS07545 ydaF 1485657..1486208 (-) 552 WP_003246691.1 GNAT family protein -
  IRJ27_RS07550 lyxE 1486294..1486797 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  IRJ27_RS07555 ydaD 1486813..1487673 (-) 861 WP_003246648.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=442038 IRJ27_RS07525 WP_003246585.1 1482889..1483323(-) (lrpC) [Bacillus subtilis strain N1303-2Ay]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=442038 IRJ27_RS07525 WP_003246585.1 1482889..1483323(-) (lrpC) [Bacillus subtilis strain N1303-2Ay]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1