Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IRJ27_RS06055 Genome accession   NZ_CP064095
Coordinates   1207293..1208423 (-) Length   376 a.a.
NCBI ID   WP_003243267.1    Uniprot ID   Q59HN8
Organism   Bacillus subtilis strain N1303-2Ay     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1202293..1213423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ27_RS06010 cotJC 1202396..1202965 (-) 570 WP_003233850.1 spore coat protein CotJC -
  IRJ27_RS06015 cotJB 1202980..1203243 (-) 264 WP_003219491.1 spore coat protein CotJB -
  IRJ27_RS06020 cotJA 1203227..1203475 (-) 249 WP_003219489.1 spore coat-associated protein CotJA -
  IRJ27_RS06025 yesF 1203602..1204462 (-) 861 WP_003243852.1 NAD-dependent epimerase/dehydratase family protein -
  IRJ27_RS06030 yesE 1204459..1204902 (-) 444 WP_003233857.1 nuclear transport factor 2 family protein -
  IRJ27_RS06035 yezE 1204981..1205565 (-) 585 WP_003243181.1 TetR/AcrR family transcriptional regulator -
  IRJ27_RS06040 yeeK 1205680..1206117 (-) 438 WP_003244206.1 spore coat protein YeeK -
  IRJ27_RS06045 yeeI 1206251..1206970 (-) 720 WP_003242611.1 YebC/PmpR family DNA-binding transcriptional regulator -
  IRJ27_RS06050 phrH 1207130..1207303 (-) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  IRJ27_RS06055 rapC 1207293..1208423 (-) 1131 WP_003243267.1 response regulator aspartate phosphatase RapH Regulator
  IRJ27_RS06060 - 1208585..1209607 (-) 1023 WP_003243884.1 hypothetical protein -
  IRJ27_RS06065 yeeF 1209819..1211828 (+) 2010 WP_003242909.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  IRJ27_RS06070 yezG 1211848..1212303 (+) 456 WP_010886434.1 TIGR01741 family protein -
  IRJ27_RS06075 yezA 1212543..1212749 (+) 207 WP_003233877.1 bacteriocin immunity protein -
  IRJ27_RS06080 - 1212816..1213121 (+) 306 WP_003242885.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44003.32 Da        Isoelectric Point: 5.7372

>NTDB_id=442029 IRJ27_RS06055 WP_003243267.1 1207293..1208423(-) (rapC) [Bacillus subtilis strain N1303-2Ay]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=442029 IRJ27_RS06055 WP_003243267.1 1207293..1208423(-) (rapC) [Bacillus subtilis strain N1303-2Ay]
TTGAGTCAAGCCATACCGTCTTCGCGTGTTGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTTGAGCAGGACATTCAGCAGATGGAAGAAGATCAGGATTTACTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGAAAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATCGAGACCCCTCAGAAAAAACTCACAGGTCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGATATTGAGAAAGCGGAATTCCATTTTAAAGTGGCAGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGTAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCAGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3Q15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402