Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HJD21_RS20780 Genome accession   NZ_CP052877
Coordinates   4343534..4344070 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain C21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4338534..4349070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJD21_RS20760 (HJD21_20760) soxR 4340262..4340726 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  HJD21_RS20765 (HJD21_20765) soxS 4340812..4341135 (+) 324 WP_000019364.1 superoxide response transcriptional regulator SoxS -
  HJD21_RS20770 (HJD21_20770) pdeC 4341138..4342724 (-) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  HJD21_RS20775 (HJD21_20775) yjcB 4343154..4343435 (+) 282 WP_001295689.1 YjcB family protein -
  HJD21_RS20780 (HJD21_20780) ssb 4343534..4344070 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HJD21_RS20785 (HJD21_20785) uvrA 4344324..4347146 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HJD21_RS20790 (HJD21_20790) yjbR 4347181..4347537 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HJD21_RS20795 (HJD21_20795) yjbQ 4347541..4347957 (-) 417 WP_000270383.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HJD21_RS20800 (HJD21_20800) aphA 4348068..4348781 (-) 714 WP_001317548.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=442006 HJD21_RS20780 WP_000168305.1 4343534..4344070(-) (ssb) [Escherichia coli strain C21]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=442006 HJD21_RS20780 WP_000168305.1 4343534..4344070(-) (ssb) [Escherichia coli strain C21]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489