Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HJD21_RS14105 Genome accession   NZ_CP052877
Coordinates   2905097..2905726 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain C21     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2900097..2910726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJD21_RS14090 (HJD21_14090) helD 2900339..2902393 (-) 2055 WP_000420536.1 DNA helicase IV -
  HJD21_RS14095 (HJD21_14095) yccF 2902516..2902962 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HJD21_RS14100 (HJD21_14100) yccS 2902972..2905134 (+) 2163 WP_000875020.1 YccS family putative transporter -
  HJD21_RS14105 (HJD21_14105) sxy/tfoX 2905097..2905726 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HJD21_RS14110 (HJD21_14110) sulA 2905945..2906454 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HJD21_RS14115 (HJD21_14115) ompA 2906811..2907851 (+) 1041 WP_000750416.1 porin OmpA -
  HJD21_RS14120 (HJD21_14120) matP 2907927..2908379 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HJD21_RS14125 (HJD21_14125) ycbZ 2908565..2910325 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=442003 HJD21_RS14105 WP_000839153.1 2905097..2905726(-) (sxy/tfoX) [Escherichia coli strain C21]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=442003 HJD21_RS14105 WP_000839153.1 2905097..2905726(-) (sxy/tfoX) [Escherichia coli strain C21]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1