Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   IRJ27_RS00695 Genome accession   NZ_CP064095
Coordinates   184580..185011 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain N1303-2Ay     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 179580..190011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ27_RS00685 hexA 181064..183640 (-) 2577 WP_003244841.1 DNA mismatch repair protein MutS Machinery gene
  IRJ27_RS00690 cotE 183773..184318 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  IRJ27_RS00695 ymcA 184580..185011 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  IRJ27_RS00700 miaB 185013..186542 (-) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  IRJ27_RS00705 kbl 186690..187868 (-) 1179 WP_003231837.1 glycine C-acetyltransferase -
  IRJ27_RS00710 tdh 187881..188924 (-) 1044 WP_003244880.1 L-threonine 3-dehydrogenase -
  IRJ27_RS00715 spoVS 189190..189450 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=441981 IRJ27_RS00695 WP_003231834.1 184580..185011(-) (ymcA) [Bacillus subtilis strain N1303-2Ay]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=441981 IRJ27_RS00695 WP_003231834.1 184580..185011(-) (ymcA) [Bacillus subtilis strain N1303-2Ay]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1