Detailed information NTG0441959

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: HJC54_RS22240
• Genome accession: NZ_CP052867
• Coordinates: 2075549..2076724 (+)
• Length: 391 a.a.
• NCBI ID: WP_169512165.1
• Uniprot ID: -
• Organism: Burkholderia glumae strain HN1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2070549..2081724

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HJC54_RS22215 (HJC54_22230)	hisC	2070983..2072050 (+)	1068	WP_169512164.1	histidinol-phosphate transaminase	-
HJC54_RS22220 (HJC54_22235)	-	2072115..2072384 (-)	270	WP_015877053.1	YfhL family 4Fe-4S dicluster ferredoxin	-
HJC54_RS22225 (HJC54_22240)	-	2072669..2073991 (+)	1323	WP_017424335.1	TIGR00366 family protein	-
HJC54_RS22230 (HJC54_22245)	coaD	2074136..2074636 (-)	501	WP_015877055.1	pantetheine-phosphate adenylyltransferase	-
HJC54_RS22235 (HJC54_22250)	rsmD	2074747..2075361 (-)	615	WP_035983602.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
HJC54_RS22240 (HJC54_22255)	pilA	2075549..2076724 (+)	1176	WP_169512165.1	signal recognition particle-docking protein FtsY	Machinery gene
HJC54_RS22245 (HJC54_22260)	ybiB	2077294..2078271 (+)	978	WP_015877058.1	DNA-binding protein YbiB	-
HJC54_RS22250 (HJC54_22265)	leuA	2078685..2080334 (+)	1650	WP_169512166.1	2-isopropylmalate synthase	-
HJC54_RS22255 (HJC54_22270)	-	2080532..2080918 (-)	387	WP_015877060.1	nuclear transport factor 2 family protein	-
HJC54_RS22260 (HJC54_22275)	-	2080958..2081527 (-)	570	WP_017923408.1	acyloxyacyl hydrolase	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 40776.74 Da
• Isoelectric Point: 5.4803

>NTDB_id=441959 HJC54_RS22240 WP_169512165.1 2075549..2076724(+) (pilA) [Burkholderia glumae strain HN1]
MFSFFKRLIGSKADDASQDAPAADEQASAAHAPDAAGHAAAAASRPAPAPAHDAEPAASPAAPVPAAPGPAPAAVPAAPA
VEVVPPPAPEPAAKKSWIARLRSGLSKTSTSLTNVFVNTRIDDELYEELEAALLMSDAGIDATEYLLGALREKVRAERLS
DPLQVKAALRALLVDLLAPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQRFDQSVLLAAGDTFRAAAREQLAI
WGERNNVTVVQQESGDPAAVIFDAVGAARARKIDVVMADTAGRLPTQLHLMEELRKVKRVIGKAQSDAPHEVLLVIDANT
GQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFNAEEFADALLG

Nucleotide

• Length: 1176 bp

>NTDB_id=441959 HJC54_RS22240 WP_169512165.1 2075549..2076724(+) (pilA) [Burkholderia glumae strain HN1]
ATGTTCAGCTTCTTCAAACGATTGATCGGCTCGAAGGCCGACGACGCGTCGCAGGACGCGCCGGCGGCCGACGAGCAAGC
CAGCGCGGCTCACGCGCCGGACGCGGCCGGGCATGCCGCCGCCGCGGCGAGCCGGCCGGCGCCCGCGCCGGCACACGACG
CCGAACCCGCCGCCAGCCCGGCTGCACCGGTGCCGGCCGCCCCCGGCCCCGCCCCTGCGGCCGTGCCCGCCGCCCCCGCC
GTCGAAGTCGTGCCGCCGCCCGCGCCTGAGCCGGCCGCGAAAAAATCCTGGATCGCACGACTACGCTCCGGGCTCTCGAA
GACGAGCACGAGCCTCACCAACGTGTTCGTCAATACCAGGATCGACGACGAACTCTACGAGGAGCTCGAAGCCGCGCTGC
TGATGTCCGATGCCGGCATCGACGCGACCGAATACCTGCTCGGCGCGCTGCGCGAGAAGGTGCGCGCCGAACGCCTGAGC
GATCCGCTGCAGGTGAAGGCCGCGCTGCGCGCGCTGCTCGTCGACCTGCTCGCGCCGCTCGAGAAATCGCTGATGCTGGG
CCGCGCCCAGCCGCTCGTGATGATGATCGCGGGCGTCAACGGAGCCGGCAAGACCACCAGCATCGGTAAGCTCGCCAAAC
ACCTGCAGCGCTTCGACCAATCGGTGCTGCTGGCCGCCGGCGACACGTTCCGCGCGGCCGCGCGCGAGCAGCTCGCGATC
TGGGGCGAGCGCAACAACGTGACCGTGGTGCAGCAGGAAAGCGGCGATCCGGCCGCCGTGATATTCGATGCGGTCGGCGC
CGCGCGCGCGCGCAAGATCGACGTGGTGATGGCCGACACCGCGGGCCGGTTGCCCACGCAGTTGCACCTGATGGAGGAAC
TGCGCAAGGTCAAGCGCGTGATCGGCAAGGCGCAGAGCGACGCGCCGCACGAGGTGCTGCTCGTGATCGACGCCAATACC
GGCCAGAACGCGCTCGCCCAGGTGAAGGCATTCGACGACGCGCTGGGCCTGACCGGGCTCATCGTCACCAAGCTCGACGG
CACCGCGAAGGGCGGCATTCTCGCCGCGATCGCGCGGCAGCGGCCGATACCCGTCTACTTCATCGGCGTCGGCGAGAAGG
TCGAGGACTTGCAGCCGTTCAACGCCGAGGAATTCGCCGACGCGCTGCTCGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (192-391)

• SRP54-type protein, helical bundle domain (SRP54_N) (110-170)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	50.82	100	0.555