Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HKK60_RS05545 Genome accession   NZ_CP052863
Coordinates   1236014..1236415 (+) Length   133 a.a.
NCBI ID   WP_005418455.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain CF13     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1231014..1241415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK60_RS05530 (HKK60_05535) tsaB 1232645..1233358 (+) 714 WP_005414253.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  HKK60_RS05535 (HKK60_05540) - 1233942..1234826 (-) 885 WP_005410719.1 energy transducer TonB -
  HKK60_RS05540 (HKK60_05545) gshB 1234826..1235773 (-) 948 WP_005410718.1 glutathione synthase -
  HKK60_RS05545 (HKK60_05550) pilG 1236014..1236415 (+) 402 WP_005418455.1 twitching motility response regulator PilG Regulator
  HKK60_RS05550 (HKK60_05555) - 1236434..1236796 (+) 363 WP_005410717.1 response regulator -
  HKK60_RS05555 (HKK60_05560) - 1236796..1237326 (+) 531 WP_005410716.1 chemotaxis protein CheW -
  HKK60_RS05560 (HKK60_05565) - 1237368..1239404 (+) 2037 WP_005410715.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14657.98 Da        Isoelectric Point: 6.3483

>NTDB_id=441938 HKK60_RS05545 WP_005418455.1 1236014..1236415(+) (pilG) [Stenotrophomonas maltophilia strain CF13]
MTENTTAGGELAGLRVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKATPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLGAIRTYVNA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=441938 HKK60_RS05545 WP_005418455.1 1236014..1236415(+) (pilG) [Stenotrophomonas maltophilia strain CF13]
ATGACTGAAAACACGACTGCGGGCGGGGAACTCGCAGGACTCCGGGTGATGGTCATCGATGATTCGAAGACCATCCGCAG
GACTGCGGAAACGCTGCTCAAGCGCGAAGGCTGCGAGGTGGTCACCGCCACCGACGGCTTCGAAGCGCTTGCGAAGATCG
CAGACCAGCAGCCGCAGATCATCTTCGTCGACATCATGATGCCGCGCCTGGACGGGTACCAGACCTGTGCGCTGATCAAG
GGCAACCAGCTGTTCAAGGCGACCCCGGTCATCATGCTCTCGTCCAAGGATGGCCTGTTCGACAAGGCGCGGGGACGCAT
CGTCGGCTCGGAGCAGTACCTGACGAAGCCTTTCACGCGTGAAGAACTGCTGGGTGCCATCCGCACATACGTCAACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.38

90.977

0.677