Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IRJ26_RS10065 Genome accession   NZ_CP064094
Coordinates   1913966..1915099 (+) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain N1108-5at     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1908966..1920099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS10035 ywmC 1909763..1910446 (+) 684 WP_003227700.1 VWA domain-containing protein -
  IRJ26_RS10040 - 1910577..1910717 (+) 141 WP_003227702.1 hypothetical protein -
  IRJ26_RS10045 ywmD 1910770..1911444 (+) 675 WP_003243553.1 VWA domain-containing protein -
  IRJ26_RS10050 - 1911538..1911699 (+) 162 WP_003227706.1 hypothetical protein -
  IRJ26_RS10055 fdhD 1911945..1912733 (+) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  IRJ26_RS10060 moaA 1912749..1913774 (+) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  IRJ26_RS10065 rapC 1913966..1915099 (+) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  IRJ26_RS10070 - 1915255..1915734 (+) 480 WP_003244390.1 hypothetical protein -
  IRJ26_RS10075 csbD 1915807..1915995 (+) 189 WP_003227718.1 stress response protein CsbD -
  IRJ26_RS22200 - 1916208..1916376 (+) 169 Protein_1929 urea ABC transporter substrate-binding protein -
  IRJ26_RS10085 - 1916648..1916812 (+) 165 WP_015649919.1 hypothetical protein -
  IRJ26_RS10090 ureA 1916993..1917310 (+) 318 WP_003227724.1 urease subunit gamma -
  IRJ26_RS10095 ureB 1917307..1917681 (+) 375 WP_003227726.1 urease subunit beta -
  IRJ26_RS10100 ureC 1917678..1919387 (+) 1710 WP_003243090.1 urease subunit alpha -
  IRJ26_RS10105 ywnA 1919522..1919923 (+) 402 WP_003227734.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=441896 IRJ26_RS10065 WP_003227715.1 1913966..1915099(+) (rapC) [Bacillus subtilis strain N1108-5at]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=441896 IRJ26_RS10065 WP_003227715.1 1913966..1915099(+) (rapC) [Bacillus subtilis strain N1108-5at]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAACTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424