Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   IRJ26_RS07405 Genome accession   NZ_CP064094
Coordinates   1410150..1410380 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain N1108-5at     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1405150..1415380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS07395 spoVT 1405875..1406411 (-) 537 WP_003218365.1 stage V sporulation protein T -
  IRJ26_RS07400 mfd 1406547..1410080 (-) 3534 WP_003243453.1 transcription-repair coupling factor -
  IRJ26_RS07405 subA/fin 1410150..1410380 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  IRJ26_RS07410 pth 1410440..1411006 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  IRJ26_RS07415 ctc 1411113..1411727 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  IRJ26_RS07420 prs 1411812..1412765 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  IRJ26_RS07425 glmU 1412788..1414158 (-) 1371 WP_003226732.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  IRJ26_RS07430 spoVG 1414351..1414644 (-) 294 WP_003218346.1 septation regulator SpoVG -
  IRJ26_RS07435 ridA 1414838..1415215 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=441879 IRJ26_RS07405 WP_003243417.1 1410150..1410380(-) (subA/fin) [Bacillus subtilis strain N1108-5at]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=441879 IRJ26_RS07405 WP_003243417.1 1410150..1410380(-) (subA/fin) [Bacillus subtilis strain N1108-5at]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1