Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   IRJ26_RS05305 Genome accession   NZ_CP064094
Coordinates   994049..994483 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain N1108-5at     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 989049..999483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS05290 epsK 989678..990529 (-) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -
  IRJ26_RS05295 - 990510..991598 (-) 1089 WP_003246551.1 lipoprotein -
  IRJ26_RS05300 topB 991801..993984 (-) 2184 WP_003246684.1 DNA topoisomerase III -
  IRJ26_RS05305 lrpC 994049..994483 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  IRJ26_RS05310 ydzA 994668..994958 (+) 291 WP_003246602.1 DUF3817 domain-containing protein -
  IRJ26_RS05315 amj 995002..995811 (-) 810 WP_003234394.1 lipid II flippase Amj -
  IRJ26_RS05320 ydaG 996317..996739 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  IRJ26_RS05325 ydaF 996817..997368 (-) 552 WP_003246691.1 GNAT family protein -
  IRJ26_RS05330 lyxE 997454..997957 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  IRJ26_RS05335 ydaD 997973..998833 (-) 861 WP_003246648.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=441861 IRJ26_RS05305 WP_003246585.1 994049..994483(-) (lrpC) [Bacillus subtilis strain N1108-5at]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=441861 IRJ26_RS05305 WP_003246585.1 994049..994483(-) (lrpC) [Bacillus subtilis strain N1108-5at]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1