Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   HMPREF1038_RS03010 Genome accession   NC_018630
Coordinates   549256..549522 (+) Length   88 a.a.
NCBI ID   WP_001844589.1    Uniprot ID   -
Organism   Streptococcus pneumoniae gamPNI0373     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 544256..554522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF1038_RS02985 (HMPREF1038_00604) - 544470..544979 (+) 510 WP_000619941.1 N-acetyltransferase -
  HMPREF1038_RS02990 (HMPREF1038_00605) pheT 545056..547458 (+) 2403 WP_000909142.1 phenylalanine--tRNA ligase subunit beta -
  HMPREF1038_RS02995 (HMPREF1038_00606) - 547526..548527 (-) 1002 WP_000597991.1 endonuclease/exonuclease/phosphatase family protein -
  HMPREF1038_RS03000 (HMPREF1038_00607) - 548683..549130 (+) 448 Protein_572 IS30 family transposase -
  HMPREF1038_RS03010 (HMPREF1038_00609) HI0659 549256..549522 (+) 267 WP_001844589.1 helix-turn-helix domain-containing protein Machinery gene
  HMPREF1038_RS03015 (HMPREF1038_00610) metE 549782..552031 (+) 2250 WP_000108204.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  HMPREF1038_RS03020 (HMPREF1038_00611) metF 552095..552961 (+) 867 WP_000089982.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9629.24 Da        Isoelectric Point: 5.1633

>NTDB_id=44185 HMPREF1038_RS03010 WP_001844589.1 549256..549522(+) (HI0659) [Streptococcus pneumoniae gamPNI0373]
MEGCPSELFSKEEILESDMRVAIMSELIEARNKQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVLASLGKILAV
VRLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=44185 HMPREF1038_RS03010 WP_001844589.1 549256..549522(+) (HI0659) [Streptococcus pneumoniae gamPNI0373]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTAGCTATCATGAGCGAGTT
GATTGAAGCCAGAAATAAGCAAGGAATCAGTCAGAAAAAGCTAGAGGAACTCAGTGGAGTGAGTCAGCCTGTTATAGCTA
GGATGGAGACAGGTAAGACTAGTCCACAGTTGGACACAGTCTTAAAAGTCCTAGCTAGTCTAGGAAAGATACTAGCAGTC
GTCCGACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.74

87.5

0.523

Multiple sequence alignment