Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HKK56_RS19280 Genome accession   NZ_CP052858
Coordinates   4325238..4326605 (-) Length   455 a.a.
NCBI ID   WP_169390296.1    Uniprot ID   -
Organism   Pseudomonas sp. ADAK20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4320238..4331605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK56_RS19260 (HKK56_19260) yjiA 4321217..4322176 (-) 960 WP_029292117.1 GTPase -
  HKK56_RS19265 (HKK56_19265) - 4322327..4322524 (-) 198 WP_029292120.1 YbdD/YjiX family protein -
  HKK56_RS19270 (HKK56_19270) - 4322540..4324606 (-) 2067 WP_029292122.1 carbon starvation CstA family protein -
  HKK56_RS19275 (HKK56_19275) - 4324780..4325148 (+) 369 WP_169390297.1 PilZ domain-containing protein -
  HKK56_RS19280 (HKK56_19280) radA 4325238..4326605 (-) 1368 WP_169390296.1 DNA repair protein RadA Machinery gene
  HKK56_RS19285 (HKK56_19285) - 4326641..4327171 (-) 531 WP_169390295.1 ankyrin repeat domain-containing protein -
  HKK56_RS19290 (HKK56_19290) - 4327309..4328850 (-) 1542 WP_029292130.1 catalase -
  HKK56_RS19295 (HKK56_19295) mscL 4329138..4329554 (+) 417 WP_029292131.1 large-conductance mechanosensitive channel protein MscL -
  HKK56_RS19300 (HKK56_19300) - 4329614..4330390 (-) 777 WP_169390294.1 ferredoxin--NADP reductase -
  HKK56_RS19305 (HKK56_19305) - 4330820..4331530 (+) 711 WP_154906570.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48681.14 Da        Isoelectric Point: 6.8987

>NTDB_id=441816 HKK56_RS19280 WP_169390296.1 4325238..4326605(-) (radA) [Pseudomonas sp. ADAK20]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVISSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=441816 HKK56_RS19280 WP_169390296.1 4325238..4326605(-) (radA) [Pseudomonas sp. ADAK20]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGTGGCGAATG
CGGAGCGTGGAACACCCTCACTGAAACCATGATCGAAAGTGGCGGCGCCGCAGCGCCCACCGGTCGCGCAGGCTGGACCG
GCCAGCAAGCCCAGATCAAGACCCTGGCTGAAGTCAGCGTCGAAGAAATCCCGCGCTTTTCTACCGCTTCCGGCGAGCTT
GACCGAGTGCTCGGTGGCGGCCTGGTGGACGGCTCGGTGGTGTTGATCGGCGGCGATCCGGGGATCGGCAAATCGACCAT
CCTCCTGCAAACCCTGTGCAGCATCGCCAGCCGTATGCCGGCCTTGTATGTCACCGGCGAAGAATCCCAGCAGCAAGTGG
CCATGCGCGCCCGTCGCCTGGGCCTGCCCCAGGACCAGTTGCGGGTCATGACCGAGACCTGTATCGAAAGCATCATCGCC
ACCGCCCGTGTGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAGCAGCTGCAATCGGCGCC
GGGAGGGGTGTCCCAGGTGCGGGAGAGCGCGGCGTTGCTGGTGCGCTATGCCAAGCAAAGCGGTACGGCGATTTTCCTGG
TGGGCCATGTCACCAAGGAAGGCGCGTTGGCCGGCCCGCGGGTGCTGGAGCATATGGTCGATACAGTGCTGTATTTCGAG
GGCGAGTCCGATGGGCGCCTGCGCCTGTTGCGCGCGGTGAAAAACCGTTTTGGTGCGGTCAACGAGCTGGGTGTGTTCGC
CATGACGGACCGGGGGCTCAAAGAAGTCTCCAACCCCTCGGCGATCTTTCTGACCCGCGCCCAGGAAGAAGTACCGGGCA
GTGTGGTAATGGCAACGTGGGAGGGCACCCGGCCGATGCTCGTGGAAGTCCAGGCCCTGGTGGACGACAGCCACCTGGCC
AACCCGCGCCGCGTGACCCTGGGCCTGGATCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCATCGCCACGGCGGGAT
TCCGACCCATGACCAGGACGTGTTCCTCAACGTGGTCGGCGGTGTAAAGGTGCTGGAAACCGCGTCGGACTTGGCGTTGA
TGGCGGCGGTGATTTCCAGCCTGCGCAATCGGCCGTTGCCCCATGACCTGCTGGTATTTGGTGAGGTGGGCTTGTCGGGC
GAAGTGCGTCCGGTGCCCAGCGGCCAGGAGCGTCTGAAGGAAGCGGCCAAGCATGGCTTCAAGCGTGCCATCGTGCCCAA
GGGCAATGCACCGAAGGAGGCGCCACCGGGGTTGCAGGTGATTGCGGTGACGCGTCTGGAGCAGGCCCTGGACGCCTTGT
TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468