Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HKK56_RS17275 Genome accession   NZ_CP052858
Coordinates   3882033..3883091 (-) Length   352 a.a.
NCBI ID   WP_029295312.1    Uniprot ID   A0A176V7J5
Organism   Pseudomonas sp. ADAK20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3882033..3896971 3882033..3883091 within 0


Gene organization within MGE regions


Location: 3882033..3896971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK56_RS17275 (HKK56_17275) recA 3882033..3883091 (-) 1059 WP_029295312.1 recombinase RecA Machinery gene
  HKK56_RS17280 (HKK56_17280) - 3883175..3883675 (-) 501 WP_029295310.1 CinA family protein -
  HKK56_RS17285 (HKK56_17285) - 3883757..3884245 (-) 489 WP_237150385.1 lysis system i-spanin subunit Rz -
  HKK56_RS17290 (HKK56_17290) - 3884254..3884802 (-) 549 WP_169391199.1 glycoside hydrolase family 19 protein -
  HKK56_RS17295 (HKK56_17295) - 3884822..3885832 (-) 1011 WP_169390399.1 contractile injection system protein, VgrG/Pvc8 family -
  HKK56_RS17300 (HKK56_17300) - 3885842..3886054 (-) 213 WP_169390398.1 tail protein X -
  HKK56_RS17305 (HKK56_17305) - 3886047..3886430 (-) 384 WP_029295297.1 phage tail protein -
  HKK56_RS27055 - 3886430..3887794 (-) 1365 WP_237150386.1 tail tape measure protein -
  HKK56_RS17315 (HKK56_17315) - 3887923..3888489 (-) 567 WP_029295295.1 phage tail assembly protein -
  HKK56_RS17320 (HKK56_17320) - 3888660..3889166 (-) 507 WP_029295294.1 phage major tail tube protein -
  HKK56_RS17325 (HKK56_17325) - 3889166..3890332 (-) 1167 WP_029295293.1 tail protein -
  HKK56_RS17330 (HKK56_17330) - 3890335..3890538 (-) 204 WP_029295291.1 hypothetical protein -
  HKK56_RS17335 (HKK56_17335) - 3890628..3890864 (-) 237 WP_029295289.1 tail fiber assembly protein -
  HKK56_RS17340 (HKK56_17340) - 3890876..3891628 (-) 753 WP_029295287.1 hypothetical protein -
  HKK56_RS17345 (HKK56_17345) - 3891662..3892195 (-) 534 WP_029295285.1 phage tail protein -
  HKK56_RS17350 (HKK56_17350) - 3892192..3892830 (-) 639 WP_029295284.1 phage tail protein I -
  HKK56_RS17355 (HKK56_17355) - 3892827..3893822 (-) 996 WP_029295282.1 baseplate J/gp47 family protein -
  HKK56_RS17360 (HKK56_17360) - 3893819..3894151 (-) 333 WP_029295280.1 phage baseplate protein -
  HKK56_RS17365 (HKK56_17365) - 3894161..3894772 (-) 612 WP_169390397.1 phage baseplate assembly protein V -
  HKK56_RS17370 (HKK56_17370) - 3894776..3895288 (-) 513 WP_169390396.1 hypothetical protein -
  HKK56_RS17375 (HKK56_17375) - 3895310..3895642 (-) 333 WP_029295276.1 phage holin family protein -
  HKK56_RS17380 (HKK56_17380) - 3896243..3896971 (-) 729 WP_071610020.1 XRE family transcriptional regulator -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37579.15 Da        Isoelectric Point: 5.5038

>NTDB_id=441812 HKK56_RS17275 WP_029295312.1 3882033..3883091(-) (recA) [Pseudomonas sp. ADAK20]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLQDNPDIAATLEK
QIRDKLLTPAPDVKAAANREPVDDMAEADADI

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=441812 HKK56_RS17275 WP_029295312.1 3882033..3883091(-) (recA) [Pseudomonas sp. ADAK20]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCTTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCGGAGTCTTCTGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCACAAAAAATGGGCGCCACCTGTGCGTTCGTCGATGCCGAGCACGCCCTGGATCCTGAATACGCTGGCAAGCTGGG
CGTCAATGTTGACGACCTGCTGGTTTCGCAGCCGGACACCGGCGAGCAAGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCGGCCCTGGTGCCGAAGGCCGAGATCGAAGGCGAAATGGGCGAC
ATGCACGTCGGCCTGCAAGCCCGTCTGATGTCCCAGGCCCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGGATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACTACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGCCTGGACATCCGTCGTACCGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGTAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTGGCTCCGCCATTCCGTCAGGCTGAGTTCCAGATTCTCTACGGTAAGGGTAT
TTACCTGAACGGCGAGATGATCGACCTGGGCGTGCTGCACGGTTTTGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGCAGGACAACCCCGATATTGCGGCGACCCTTGAGAAG
CAGATCCGCGACAAGCTGCTGACCCCAGCGCCAGACGTCAAGGCCGCCGCCAACCGCGAACCTGTTGACGACATGGCAGA
AGCCGACGCTGATATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A176V7J5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.714

99.432

0.872
  recA Acinetobacter baylyi ADP1

73.926

99.148

0.733
  recA Acinetobacter baumannii D1279779

73.178

97.443

0.713
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.076

93.466

0.702
  recA Vibrio cholerae strain A1552

75.076

93.466

0.702
  recA Ralstonia pseudosolanacearum GMI1000

68.571

99.432

0.682
  recA Glaesserella parasuis strain SC1401

70.92

95.739

0.679
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae strain FA1090

72.222

92.045

0.665
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

92.898

0.599
  recA Helicobacter pylori strain NCTC11637

59.544

99.716

0.594
  recA Helicobacter pylori 26695

58.974

99.716

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

94.886

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

91.193

0.562
  recA Streptococcus mutans UA159

59.692

92.33

0.551
  recA Streptococcus pyogenes NZ131

57.927

93.182

0.54
  recA Streptococcus pneumoniae Rx1

58.104

92.898

0.54
  recA Streptococcus pneumoniae R6

58.104

92.898

0.54
  recA Streptococcus pneumoniae TIGR4

58.104

92.898

0.54
  recA Streptococcus pneumoniae D39

58.104

92.898

0.54
  recA Streptococcus mitis NCTC 12261

58.333

92.045

0.537
  recA Streptococcus mitis SK321

58.333

92.045

0.537
  recA Latilactobacillus sakei subsp. sakei 23K

58.567

91.193

0.534
  recA Lactococcus lactis subsp. cremoris KW2

57.276

91.761

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.308

92.33

0.52