Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   IRJ24_RS18330 Genome accession   NZ_CP064093
Coordinates   3495033..3495464 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain N1282-4at     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3490033..3500464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS18320 hexA 3491517..3494093 (-) 2577 WP_003244841.1 DNA mismatch repair protein MutS Machinery gene
  IRJ24_RS18325 cotE 3494226..3494771 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  IRJ24_RS18330 ymcA 3495033..3495464 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  IRJ24_RS18335 miaB 3495466..3496995 (-) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  IRJ24_RS18340 kbl 3497143..3498321 (-) 1179 WP_003231837.1 glycine C-acetyltransferase -
  IRJ24_RS18345 tdh 3498334..3499377 (-) 1044 WP_003244880.1 L-threonine 3-dehydrogenase -
  IRJ24_RS18350 spoVS 3499643..3499903 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=441778 IRJ24_RS18330 WP_003231834.1 3495033..3495464(-) (ymcA) [Bacillus subtilis strain N1282-4at]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=441778 IRJ24_RS18330 WP_003231834.1 3495033..3495464(-) (ymcA) [Bacillus subtilis strain N1282-4at]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1