Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IRJ24_RS07780 Genome accession   NZ_CP064093
Coordinates   1497684..1498817 (+) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain N1282-4at     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1492684..1503817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS07750 ywmC 1493481..1494164 (+) 684 WP_003227700.1 VWA domain-containing protein -
  IRJ24_RS07755 - 1494295..1494435 (+) 141 WP_003227702.1 hypothetical protein -
  IRJ24_RS07760 ywmD 1494488..1495162 (+) 675 WP_003243553.1 VWA domain-containing protein -
  IRJ24_RS07765 - 1495256..1495417 (+) 162 WP_003227706.1 hypothetical protein -
  IRJ24_RS07770 fdhD 1495663..1496451 (+) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  IRJ24_RS07775 moaA 1496467..1497492 (+) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  IRJ24_RS07780 rapC 1497684..1498817 (+) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  IRJ24_RS07785 - 1498973..1499452 (+) 480 WP_003244390.1 hypothetical protein -
  IRJ24_RS07790 csbD 1499525..1499713 (+) 189 WP_003227718.1 stress response protein CsbD -
  IRJ24_RS22160 - 1499926..1500094 (+) 169 Protein_1473 urea ABC transporter substrate-binding protein -
  IRJ24_RS07800 - 1500366..1500530 (+) 165 WP_015649919.1 hypothetical protein -
  IRJ24_RS07805 ureA 1500711..1501028 (+) 318 WP_003227724.1 urease subunit gamma -
  IRJ24_RS07810 ureB 1501025..1501399 (+) 375 WP_003227726.1 urease subunit beta -
  IRJ24_RS07815 ureC 1501396..1503105 (+) 1710 WP_003243090.1 urease subunit alpha -
  IRJ24_RS07820 ywnA 1503240..1503641 (+) 402 WP_003227734.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=441713 IRJ24_RS07780 WP_003227715.1 1497684..1498817(+) (rapC) [Bacillus subtilis strain N1282-4at]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=441713 IRJ24_RS07780 WP_003227715.1 1497684..1498817(+) (rapC) [Bacillus subtilis strain N1282-4at]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAACTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424