Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   IRJ24_RS05135 Genome accession   NZ_CP064093
Coordinates   993868..994098 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain N1282-4at     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 988868..999098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS05125 spoVT 989593..990129 (-) 537 WP_003218365.1 stage V sporulation protein T -
  IRJ24_RS05130 mfd 990265..993798 (-) 3534 WP_003243453.1 transcription-repair coupling factor -
  IRJ24_RS05135 subA/fin 993868..994098 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  IRJ24_RS05140 pth 994158..994724 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  IRJ24_RS05145 ctc 994831..995445 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  IRJ24_RS05150 prs 995530..996483 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  IRJ24_RS05155 glmU 996506..997876 (-) 1371 WP_003226732.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  IRJ24_RS05160 spoVG 998069..998362 (-) 294 WP_003218346.1 septation regulator SpoVG -
  IRJ24_RS05165 ridA 998556..998933 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=441696 IRJ24_RS05135 WP_003243417.1 993868..994098(-) (subA/fin) [Bacillus subtilis strain N1282-4at]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=441696 IRJ24_RS05135 WP_003243417.1 993868..994098(-) (subA/fin) [Bacillus subtilis strain N1282-4at]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1