Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   IRJ24_RS03040 Genome accession   NZ_CP064093
Coordinates   577780..578214 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain N1282-4at     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 572780..583214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS03025 epsK 573409..574260 (-) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -
  IRJ24_RS03030 - 574241..575329 (-) 1089 WP_003246551.1 lipoprotein -
  IRJ24_RS03035 topB 575532..577715 (-) 2184 WP_003246684.1 DNA topoisomerase III -
  IRJ24_RS03040 lrpC 577780..578214 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  IRJ24_RS03045 ydzA 578399..578689 (+) 291 WP_003246602.1 DUF3817 domain-containing protein -
  IRJ24_RS03050 amj 578733..579542 (-) 810 WP_003234394.1 lipid II flippase Amj -
  IRJ24_RS03055 ydaG 580048..580470 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  IRJ24_RS03060 ydaF 580548..581099 (-) 552 WP_003246691.1 GNAT family protein -
  IRJ24_RS03065 lyxE 581185..581688 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  IRJ24_RS03070 ydaD 581704..582564 (-) 861 WP_003246648.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=441678 IRJ24_RS03040 WP_003246585.1 577780..578214(-) (lrpC) [Bacillus subtilis strain N1282-4at]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=441678 IRJ24_RS03040 WP_003246585.1 577780..578214(-) (lrpC) [Bacillus subtilis strain N1282-4at]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1