Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FYB63_RS13380 Genome accession   NZ_CP052849
Coordinates   2749029..2750255 (-) Length   408 a.a.
NCBI ID   WP_005015354.1    Uniprot ID   A0A158M167
Organism   Bordetella holmesii strain J790     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2744029..2755255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYB63_RS13360 (FYB63_13815) phnC 2744724..2745494 (+) 771 WP_005015347.1 phosphonate ABC transporter ATP-binding protein -
  FYB63_RS13365 (FYB63_13820) phnE 2745482..2746357 (+) 876 WP_005019899.1 phosphonate ABC transporter, permease protein PhnE -
  FYB63_RS13370 (FYB63_13825) phnE 2746354..2747175 (+) 822 WP_005015351.1 phosphonate ABC transporter, permease protein PhnE -
  FYB63_RS13375 (FYB63_13830) - 2747372..2748961 (+) 1590 WP_005015352.1 CYTH and CHAD domain-containing protein -
  FYB63_RS13380 (FYB63_13835) pilA 2749029..2750255 (-) 1227 WP_005015354.1 signal recognition particle-docking protein FtsY Machinery gene
  FYB63_RS13385 (FYB63_13840) rsmD 2750328..2750948 (+) 621 WP_026087870.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FYB63_RS13390 (FYB63_13845) coaD 2750972..2751484 (+) 513 WP_005015356.1 pantetheine-phosphate adenylyltransferase -
  FYB63_RS13395 (FYB63_13850) - 2751542..2751796 (+) 255 WP_005015357.1 YfhL family 4Fe-4S dicluster ferredoxin -
  FYB63_RS13400 (FYB63_13855) - 2751793..2753004 (+) 1212 WP_005015358.1 benzoate/H(+) symporter BenE family transporter -
  FYB63_RS13405 (FYB63_13860) - 2753001..2753384 (-) 384 WP_005015361.1 MOSC N-terminal beta barrel domain-containing protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 42070.54 Da        Isoelectric Point: 7.4722

>NTDB_id=441659 FYB63_RS13380 WP_005015354.1 2749029..2750255(-) (pilA) [Bordetella holmesii strain J790]
MFSFFKKKTPPPAAQASPAPPPEPVVQPAAPVSPPAVPSPPPAAAPAVPVPPPAVHPAAPPVQPEPAASPVPAVPEPVAA
PVVPPAPSPSAIAPAAAAEPAAAPKKASWLNRLKQGLARTGQSIGGIFVGVKVDENLFEELESALIMADAGIEATEKLLT
ELRARVKKDRIEDAAQVKTALRQLLTQHLKPLERSFDLTRTQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGD
TFRAAAREQLVEWGTRNNVTVIAQEGGDPAAVAFDAVNAGRARGVGVVMIDTAGRLPTQLHLMEELKKIRRVISKADAAA
PHEVLLVVDGNTGQNALAQIRAFDAAIQLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPVPVYWIGVGEGLEDLQPFVAEE
FASALLAD

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=441659 FYB63_RS13380 WP_005015354.1 2749029..2750255(-) (pilA) [Bordetella holmesii strain J790]
ATGTTCAGCTTCTTCAAGAAAAAGACCCCTCCGCCCGCCGCGCAGGCTTCGCCCGCGCCGCCGCCGGAGCCTGTCGTCCA
GCCGGCCGCGCCCGTCTCGCCGCCCGCTGTTCCGTCCCCTCCACCCGCCGCAGCGCCTGCTGTGCCTGTCCCGCCGCCTG
CGGTGCATCCGGCGGCGCCGCCCGTTCAGCCCGAACCGGCCGCCTCGCCTGTGCCCGCCGTGCCGGAACCCGTCGCCGCG
CCCGTTGTGCCGCCGGCGCCTTCGCCTTCGGCCATCGCGCCGGCCGCTGCCGCCGAACCGGCCGCCGCACCCAAAAAGGC
CTCCTGGCTCAATCGTCTCAAACAGGGCCTGGCGCGTACCGGGCAGAGCATCGGCGGCATTTTCGTCGGCGTAAAAGTCG
ACGAAAATCTGTTCGAAGAGCTGGAATCCGCCCTCATCATGGCCGATGCCGGTATCGAAGCCACCGAAAAACTCCTCACG
GAGTTGCGTGCGCGCGTCAAAAAAGACCGCATCGAAGATGCGGCTCAGGTCAAGACGGCGCTGCGTCAACTGTTGACGCA
ACACCTCAAGCCGCTCGAGCGCAGCTTTGACCTCACGCGCACCCAGCCTCTGGTGGTGATGATCGCCGGCGTCAACGGCG
CCGGCAAAACGACCTCCATTGGCAAGCTGGCCCATACCTTTCAACGGCAGGGCGCCAGTGTGCTGCTGGCTGCCGGCGAC
ACGTTCCGCGCGGCAGCGCGTGAGCAACTGGTCGAATGGGGCACCCGCAACAACGTCACCGTCATCGCGCAGGAAGGGGG
CGACCCCGCCGCCGTGGCCTTTGACGCGGTCAATGCGGGCCGGGCGCGTGGCGTCGGCGTGGTCATGATAGACACCGCAG
GGCGCCTGCCCACGCAGTTGCACCTGATGGAAGAACTCAAGAAGATCCGTCGCGTCATCAGCAAGGCCGATGCGGCCGCG
CCGCATGAGGTTTTACTGGTGGTCGATGGCAACACCGGCCAGAACGCGCTGGCCCAGATCCGGGCCTTTGACGCGGCCAT
TCAGCTCACGGGTCTGGTCGTGACAAAACTGGACGGTACCGCCAAGGGCGGCACCCTGGCCGCCGTGGCCGCCGGCAGCC
AGGGCGTGCGGCCGGTGCCCGTCTACTGGATAGGCGTGGGCGAGGGCCTGGAAGACTTGCAGCCCTTCGTGGCCGAAGAG
TTCGCCTCCGCCTTGCTGGCAGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(204-406)

SRP54-type protein, helical bundle domain (SRP54_N)

(122-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A158M167

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.765

100

0.52