Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   IRJ22_RS17255 Genome accession   NZ_CP064092
Coordinates   3330185..3330415 (+) Length   76 a.a.
NCBI ID   WP_003178210.1    Uniprot ID   A0A6I1MI94
Organism   Bacillus licheniformis strain C5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3325185..3335415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS17225 ridA 3325242..3325619 (+) 378 WP_003178196.1 2-iminobutanoate/2-iminopropanoate deaminase -
  IRJ22_RS17230 spoVG 3325799..3326092 (+) 294 WP_003178198.1 septation regulator SpoVG -
  IRJ22_RS17235 glmU 3326397..3327767 (+) 1371 WP_003178200.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  IRJ22_RS17240 - 3327788..3328738 (+) 951 WP_003178203.1 ribose-phosphate diphosphokinase -
  IRJ22_RS17245 - 3328819..3329445 (+) 627 WP_003178205.1 50S ribosomal protein L25/general stress protein Ctc -
  IRJ22_RS17250 pth 3329562..3330128 (+) 567 WP_003178208.1 aminoacyl-tRNA hydrolase -
  IRJ22_RS17255 subA/fin 3330185..3330415 (+) 231 WP_003178210.1 anti-sigma-F factor Fin family protein Machinery gene
  IRJ22_RS17260 mfd 3330480..3334013 (+) 3534 WP_011197468.1 transcription-repair coupling factor -
  IRJ22_RS17265 spoVT 3334151..3334687 (+) 537 WP_003178213.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8950.85 Da        Isoelectric Point: 5.3733

>NTDB_id=441645 IRJ22_RS17255 WP_003178210.1 3330185..3330415(+) (subA/fin) [Bacillus licheniformis strain C5]
MALHYYCRHCGVKVGSLDHSYVNSEQLGFNHLTNDERNDMISYMDNGDLHVKTICEDCQEALERNPDYHQYHSFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=441645 IRJ22_RS17255 WP_003178210.1 3330185..3330415(+) (subA/fin) [Bacillus licheniformis strain C5]
ATGGCTTTACATTATTATTGCCGGCATTGCGGCGTTAAAGTCGGAAGTCTTGACCATTCTTATGTAAACAGTGAACAGTT
AGGCTTTAACCACTTAACAAATGATGAAAGAAACGATATGATTTCTTATATGGATAATGGGGATTTACACGTGAAGACGA
TATGTGAAGATTGTCAAGAAGCGCTTGAGCGAAACCCGGATTATCACCAATATCATTCATTTATTCAATAG

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MI94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

77.632

100

0.776