Detailed information NTG0441634

Bioinformatically predicted

Overview

• Name: rpoN/rpoN1
• Type: Machinery gene
• Locus tag: HHA21_RS00410
• Genome accession: NZ_CP052848
• Coordinates: 91499..92935 (+)
• Length: 478 a.a.
• NCBI ID: WP_080666485.1
• Uniprot ID: -
• Organism: Bordetella hinzii strain 1G1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 86499..97935

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHA21_RS00395 (HHA21_00395)	-	87348..88637 (+)	1290	WP_032962851.1	amidase	-
HHA21_RS00400 (HHA21_00400)	leuA	88726..90435 (-)	1710	WP_029577798.1	2-isopropylmalate synthase	-
HHA21_RS00405 (HHA21_00405)	-	90811..91500 (-)	690	WP_029577797.1	hypothetical protein	-
HHA21_RS00410 (HHA21_00410)	rpoN/rpoN1	91499..92935 (+)	1437	WP_080666485.1	RNA polymerase factor sigma-54	Machinery gene
HHA21_RS00415 (HHA21_00415)	-	93056..93334 (+)	279	WP_029577795.1	(2Fe-2S)-binding protein	-
HHA21_RS00420 (HHA21_00420)	-	93396..94265 (-)	870	WP_215600234.1	LysR family transcriptional regulator	-
HHA21_RS00425 (HHA21_00425)	-	94373..95284 (+)	912	WP_029577793.1	DMT family transporter	-
HHA21_RS00430 (HHA21_00430)	bfr	95598..96074 (+)	477	WP_029577792.1	bacterioferritin	-
HHA21_RS00435 (HHA21_00435)	-	96138..96821 (-)	684	WP_029577791.1	hypothetical protein	-

Sequence

Protein

• Length: 478 a.a.
• Molecular weight: 52715.12 Da
• Isoelectric Point: 4.9223

>NTDB_id=441634 HHA21_RS00410 WP_080666485.1 91499..92935(+) (rpoN/rpoN1) [Bordetella hinzii strain 1G1]
MQNIVPMTRPALELRPGQHLTLTPQLQQSIRLLQLSSLELEAEISQALAENPLLERDESPADQVDSDPQREASVDHEDAA
PDTELRFDEMPGSGGVYPDDDIDTPARDDTLREHLLLQLSLTRAAPRDAALATLLIDELDDNGYLGSPLDEILQWLPPEL
EVEEDELRAALSLLQSFDPPGIGARDMAECLLLQLRQPDIGRLPEAAQPAVLACARQICMQHLALLATGNPARLREILRV
DEATLRAARALIVRLEPRPGRAWTAPAADYAVPDVLVRKTRQGWQAVLNSAVMPRLQINGLYAQMLSNQREAAYAGLNAQ
LQQARWMIRNVEQRFDTILRVAQAIVAHQAEFFSRGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLELKRF
FGTGVATDSGDSASATAVQAHIRQMVAEENRARPLSDSQIMERLASQGIVIARRTVAKYREALRIAPAAVRKAQAAAR

Nucleotide

• Length: 1437 bp

>NTDB_id=441634 HHA21_RS00410 WP_080666485.1 91499..92935(+) (rpoN/rpoN1) [Bordetella hinzii strain 1G1]
ATGCAAAATATTGTACCTATGACTCGTCCCGCCTTAGAACTTCGGCCCGGTCAGCATTTGACCCTGACCCCGCAGCTGCA
ACAGTCCATCCGGCTGCTGCAGCTCTCTTCGCTGGAGCTGGAGGCGGAAATCTCCCAGGCCCTGGCTGAAAATCCGTTGT
TGGAACGCGACGAAAGTCCGGCCGACCAGGTCGACAGCGACCCCCAGCGCGAAGCCAGCGTCGACCATGAGGACGCCGCC
CCGGACACCGAATTGCGCTTTGACGAGATGCCGGGCTCGGGCGGCGTCTATCCGGACGACGACATCGATACACCGGCGCG
CGATGACACGTTGCGCGAGCACCTGCTGCTGCAGCTGAGCCTGACGCGCGCCGCCCCGCGCGATGCCGCCCTGGCCACGC
TGCTCATCGACGAGCTGGATGACAACGGCTACCTGGGCTCGCCGCTCGACGAAATCCTGCAATGGCTGCCGCCCGAACTG
GAGGTCGAGGAGGACGAGCTGCGCGCGGCCTTGAGCCTGTTGCAGTCCTTCGATCCGCCGGGCATCGGCGCGCGCGACAT
GGCCGAATGCCTGCTCCTGCAGTTGCGCCAGCCTGATATCGGGCGCCTGCCCGAGGCCGCCCAGCCCGCGGTACTGGCCT
GTGCGCGGCAGATCTGCATGCAGCACCTGGCGCTGCTGGCCACCGGCAATCCGGCGCGGCTGCGCGAGATATTGCGGGTC
GACGAGGCCACGCTGCGCGCGGCGCGCGCGCTCATCGTGCGGCTGGAACCCCGCCCCGGCCGCGCCTGGACCGCGCCGGC
CGCGGACTATGCCGTGCCCGATGTGTTGGTGCGCAAGACCCGGCAGGGCTGGCAGGCCGTGCTCAACAGCGCGGTGATGC
CGCGCCTGCAGATCAACGGCCTGTATGCCCAGATGCTGTCCAACCAGCGCGAAGCGGCCTACGCAGGCCTGAATGCCCAG
CTGCAGCAGGCACGCTGGATGATACGCAACGTCGAGCAGCGTTTTGACACCATCCTGCGGGTGGCCCAGGCCATCGTCGC
GCACCAGGCGGAGTTCTTCAGCCGCGGGCCCGCCGCCATGCGGCCGCTGATCCTCAAGGACATCGCGGGCGAGCTCGGCC
TGCACGAATCCACGATTTCGCGCGCCACGACGCAGAAGTACATGCTCACTCCGTTCGGCACGCTGGAGCTCAAGCGGTTT
TTCGGCACGGGCGTGGCGACCGATAGCGGCGACTCCGCCTCGGCCACGGCGGTGCAGGCCCATATCCGGCAGATGGTGGC
CGAGGAAAATCGGGCCAGGCCCCTGTCCGATAGCCAGATCATGGAGCGCCTGGCCAGCCAAGGCATCGTGATCGCCCGCC
GCACCGTGGCCAAGTACCGCGAGGCCCTGCGTATCGCCCCGGCCGCCGTGCGCAAGGCCCAGGCCGCGGCGCGCTGA

Domains

Predicted by InterproScan.

• Sigma-54, DNA binding domain (Sigma54_DBD) (317-472)

• Sigma-54 factor, core binding domain (Sigma54_CBD) (106-302)

• Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID) (12-55)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoN/rpoN1	Ralstonia pseudosolanacearum GMI1000	50.198	100	0.531