Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   IRJ22_RS11925 Genome accession   NZ_CP064092
Coordinates   2261974..2262855 (-) Length   293 a.a.
NCBI ID   WP_003184856.1    Uniprot ID   -
Organism   Bacillus licheniformis strain C5     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2256974..2267855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS11890 - 2257183..2257659 (+) 477 WP_003184840.1 Na+/H+ antiporter subunit E -
  IRJ22_RS11895 - 2257659..2257943 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  IRJ22_RS11900 mnhG 2257927..2258301 (+) 375 WP_003184844.1 monovalent cation/H(+) antiporter subunit G -
  IRJ22_RS11905 - 2258341..2258730 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  IRJ22_RS11910 comA 2258747..2259385 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  IRJ22_RS11915 comP 2259472..2261778 (-) 2307 WP_161658321.1 histidine kinase Regulator
  IRJ22_RS11920 comX 2261801..2261965 (-) 165 WP_003184853.1 competence pheromone ComX -
  IRJ22_RS11925 comQ 2261974..2262855 (-) 882 WP_003184856.1 polyprenyl synthetase family protein Regulator
  IRJ22_RS11930 - 2263124..2264283 (+) 1160 Protein_2375 IS3 family transposase -
  IRJ22_RS11935 degQ 2264329..2264469 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  IRJ22_RS11940 - 2264955..2265302 (+) 348 WP_009329512.1 hypothetical protein -
  IRJ22_RS11945 - 2265345..2266565 (-) 1221 WP_003184864.1 EAL and HDOD domain-containing protein -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33459.20 Da        Isoelectric Point: 4.6798

>NTDB_id=441613 IRJ22_RS11925 WP_003184856.1 2261974..2262855(-) (comQ) [Bacillus licheniformis strain C5]
MNHFIDLEIPNADLNRTLHAFLDAKDQLHFSELAFYHYQSFGGTDTDAAETLGAGIELLILAFDIFDDLEDEDSPDEPWM
KINRSVAMNAATALYTISIKVIGSVSNDSCFFNKMMEYILQSSQGQHDDLSDKPVTENECLDMIKRKSGSLTALSCVLGT
MLATGKFNPTVESYALQLGIALQIENDYRGLFYNSKSDIVKNKRTLAYLYLKRKFNQSSIDLLKVFENEDKIADIEIKCY
KEKLKEAGVPQYMYVMIQLAIQKFRRGIAELELKQEEKKWLASFLLNKFDKED

Nucleotide


Download         Length: 882 bp        

>NTDB_id=441613 IRJ22_RS11925 WP_003184856.1 2261974..2262855(-) (comQ) [Bacillus licheniformis strain C5]
ATGAATCATTTTATAGACCTTGAGATTCCCAATGCGGACTTAAATCGGACGCTGCACGCTTTTCTAGATGCAAAGGACCA
GTTGCATTTCAGCGAGCTTGCTTTTTATCATTACCAAAGTTTCGGCGGCACGGACACCGATGCGGCAGAAACCCTTGGAG
CAGGCATTGAACTCTTGATTCTTGCGTTTGATATATTCGATGATTTAGAGGATGAAGACAGCCCCGATGAACCTTGGATG
AAAATCAACCGTTCAGTCGCAATGAATGCGGCGACTGCGCTTTATACAATAAGCATTAAAGTGATCGGTTCGGTGTCGAA
CGATTCTTGCTTTTTTAATAAAATGATGGAATACATATTGCAATCTTCACAAGGGCAACATGATGATCTTAGTGATAAGC
CGGTTACGGAAAACGAATGCCTTGATATGATCAAGCGCAAATCTGGTTCATTGACAGCTCTTTCATGTGTTTTGGGAACC
ATGCTCGCTACAGGTAAATTTAATCCTACTGTTGAATCTTATGCACTCCAATTGGGCATTGCTTTACAGATCGAAAATGA
TTATAGAGGTCTTTTCTATAATTCAAAAAGCGATATTGTGAAAAATAAGCGAACACTTGCTTATTTATACTTGAAAAGAA
AATTTAATCAATCCTCAATTGATTTATTAAAAGTATTTGAAAATGAGGATAAAATTGCCGATATAGAAATAAAATGTTAT
AAAGAAAAATTGAAGGAAGCTGGTGTTCCCCAATATATGTATGTCATGATTCAGCTTGCTATTCAGAAATTTAGAAGAGG
AATAGCTGAGTTAGAGCTGAAACAAGAGGAAAAGAAATGGCTTGCTTCTTTCCTTTTGAACAAGTTTGATAAGGAGGATT
AA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(41-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

44.637

98.635

0.44