Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   IRJ22_RS04815 Genome accession   NZ_CP064092
Coordinates   932702..933133 (+) Length   143 a.a.
NCBI ID   WP_003181967.1    Uniprot ID   Q65JE4
Organism   Bacillus licheniformis strain C5     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 927702..938133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS04795 - 927748..928668 (+) 921 WP_003181957.1 dipeptidase -
  IRJ22_RS04800 tdh 928793..929836 (+) 1044 WP_085959523.1 L-threonine 3-dehydrogenase -
  IRJ22_RS04805 - 929852..931027 (+) 1176 WP_003181962.1 glycine C-acetyltransferase -
  IRJ22_RS04810 miaB 931171..932700 (+) 1530 WP_003181965.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  IRJ22_RS04815 ymcA 932702..933133 (+) 432 WP_003181967.1 RicAFT regulatory complex protein RicA family protein Regulator
  IRJ22_RS04820 cotE 933376..933924 (+) 549 WP_003181968.1 outer spore coat protein CotE -
  IRJ22_RS04825 hexA 934035..936644 (+) 2610 WP_011197985.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16031.27 Da        Isoelectric Point: 5.0583

>NTDB_id=441562 IRJ22_RS04815 WP_003181967.1 932702..933133(+) (ymcA) [Bacillus licheniformis strain C5]
MTLYTKKEIVAKARELAKMIAETEEVDFFKKAEAQINENAKITGIINQIKALQKQAVNFKHYEKHEALKQTEAKIDALQE
ELDEIPIIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKNSSPSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=441562 IRJ22_RS04815 WP_003181967.1 932702..933133(+) (ymcA) [Bacillus licheniformis strain C5]
GTGACGCTTTATACGAAAAAAGAGATTGTTGCAAAAGCGCGGGAGCTCGCAAAAATGATTGCAGAAACGGAAGAAGTCGA
CTTTTTCAAAAAAGCGGAGGCACAGATTAATGAGAATGCCAAAATAACGGGCATAATCAACCAAATCAAAGCCCTGCAAA
AGCAAGCCGTCAACTTTAAACATTACGAAAAGCACGAAGCGCTTAAACAAACGGAAGCAAAGATTGACGCGCTTCAGGAA
GAGCTTGACGAGATTCCGATCATTCAAGAGTTCAGAGACTCCCAAATGGAAGTCAACGACCTTCTTCAGCTTGTCGCGCA
TACAATATCAAACCAAGTGACAAACGAGATCATCACATCGACCGGGGGAGACCTGCTGAAAGGCGAGACCGGTTCAAAAG
TGAAAAATTCATCACCGAGCTGTTCTCTATAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65JE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

86.713

100

0.867