Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   IRJ22_RS04460 Genome accession   NZ_CP064092
Coordinates   854828..855190 (+) Length   120 a.a.
NCBI ID   WP_003181796.1    Uniprot ID   A0A6I1MJA4
Organism   Bacillus licheniformis strain C5     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 849828..860190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS04430 flgD 850672..851139 (+) 468 WP_003181782.1 flagellar hook assembly protein FlgD -
  IRJ22_RS04435 flgG 851167..851958 (+) 792 WP_003181784.1 flagellar basal body rod protein FlgG -
  IRJ22_RS04440 - 852001..852216 (+) 216 WP_003181786.1 flagellar FlbD family protein -
  IRJ22_RS04445 fliL 852213..852644 (+) 432 WP_009328514.1 flagellar basal body-associated protein FliL -
  IRJ22_RS04450 fliM 852680..853678 (+) 999 WP_003181789.1 flagellar motor switch protein FliM -
  IRJ22_RS04455 fliY 853668..854801 (+) 1134 WP_003181794.1 flagellar motor switch phosphatase FliY -
  IRJ22_RS04460 pilH 854828..855190 (+) 363 WP_003181796.1 response regulator Machinery gene
  IRJ22_RS04465 fliZ 855203..855877 (+) 675 WP_009328513.1 flagella biosynthesis regulatory protein FliZ -
  IRJ22_RS04470 fliP 855870..856535 (+) 666 WP_009328512.1 flagellar type III secretion system pore protein FliP -
  IRJ22_RS04475 fliQ 856551..856820 (+) 270 WP_003181801.1 flagellar biosynthesis protein FliQ -
  IRJ22_RS04480 fliR 856828..857604 (+) 777 WP_011197977.1 flagellar biosynthetic protein FliR -
  IRJ22_RS04485 flhB 857604..858683 (+) 1080 WP_059260816.1 flagellar biosynthesis protein FlhB -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13280.60 Da        Isoelectric Point: 4.5762

>NTDB_id=441558 IRJ22_RS04460 WP_003181796.1 854828..855190(+) (pilH) [Bacillus licheniformis strain C5]
MAYKILVVDDAAFMRMMIKDILVKNGFEVVAEAQDGAQAVEKYKEHSPDLVTMDITMPEKDGITALKEIKEIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVMEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=441558 IRJ22_RS04460 WP_003181796.1 854828..855190(+) (pilH) [Bacillus licheniformis strain C5]
ATGGCTTACAAGATTTTAGTAGTTGATGATGCAGCATTTATGAGAATGATGATTAAAGATATTTTGGTGAAAAACGGCTT
TGAAGTCGTCGCAGAAGCGCAAGACGGGGCACAGGCTGTTGAAAAGTATAAAGAGCATTCACCTGATCTTGTCACAATGG
ATATCACGATGCCGGAAAAAGACGGAATCACGGCTCTTAAAGAAATCAAGGAAATCGATCCGCAGGCAAAAATCATCATG
TGTTCGGCAATGGGCCAGCAATCGATGGTTATCGACGCCATCCAGGCGGGAGCGAAAGACTTTATCGTCAAACCGTTCCA
GGCTGACCGCGTCATGGAAGCCATCAATAAAACGCTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MJA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.136

98.333

0.375