Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HKB46_RS18000 Genome accession   NZ_CP052769
Coordinates   3713293..3713811 (+) Length   172 a.a.
NCBI ID   WP_010909627.1    Uniprot ID   A0A4Q1V0D2
Organism   Mesorhizobium japonicum strain R7AstarV2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3708293..3718811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKB46_RS17980 (HKB46_18025) - 3711252..3711545 (-) 294 WP_032930375.1 hypothetical protein -
  HKB46_RS17985 (HKB46_18030) - 3711633..3712238 (-) 606 WP_010909630.1 ATP-dependent Clp protease proteolytic subunit -
  HKB46_RS17990 (HKB46_18035) - 3712261..3712737 (-) 477 WP_032933461.1 SRPBCC domain-containing protein -
  HKB46_RS17995 (HKB46_18040) - 3712752..3713066 (-) 315 WP_010909628.1 metalloregulator ArsR/SmtB family transcription factor -
  HKB46_RS18000 (HKB46_18045) ssb 3713293..3713811 (+) 519 WP_010909627.1 single-stranded DNA-binding protein Machinery gene
  HKB46_RS18005 (HKB46_18050) - 3713928..3714353 (+) 426 WP_032930374.1 OsmC family protein -
  HKB46_RS18010 (HKB46_18055) - 3714382..3715011 (-) 630 WP_010909625.1 MarC family protein -
  HKB46_RS18015 (HKB46_18060) - 3715229..3716356 (-) 1128 WP_032930373.1 acyltransferase -
  HKB46_RS18020 (HKB46_18065) - 3716610..3717140 (-) 531 WP_032930372.1 hypothetical protein -
  HKB46_RS18025 (HKB46_18070) - 3717226..3718092 (+) 867 WP_032930371.1 AraC family transcriptional regulator -
  HKB46_RS18030 (HKB46_18075) - 3718167..3718790 (-) 624 WP_010909621.1 ParB-like protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18563.49 Da        Isoelectric Point: 7.0228

>NTDB_id=441556 HKB46_RS18000 WP_010909627.1 3713293..3713811(+) (ssb) [Mesorhizobium japonicum strain R7AstarV2]
MAGSVNKVILVGNLGADPEIRRLNSGEPVVNIRIATSESWRDKNSGERKEKTEWHNVVIFNEGIAKVAEQYLKKGMKVYV
EGQLQTRKWQDQTGADKYTTEVVLQRFRGELQMLDGRQGEGGQVGGYSGGGSSRGSDFGQSGPNESFNRGGGAPRGGGGG
GSSRELDDEIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=441556 HKB46_RS18000 WP_010909627.1 3713293..3713811(+) (ssb) [Mesorhizobium japonicum strain R7AstarV2]
ATGGCGGGTAGCGTCAATAAGGTCATTCTGGTCGGCAATCTCGGCGCGGACCCTGAAATCCGCCGCCTGAACTCGGGCGA
GCCGGTCGTCAACATCCGTATCGCCACGTCGGAAAGCTGGCGCGACAAGAATTCCGGCGAGCGCAAGGAAAAGACCGAGT
GGCACAATGTCGTCATCTTCAATGAGGGCATCGCCAAGGTGGCCGAGCAGTATCTGAAGAAGGGCATGAAGGTCTATGTC
GAGGGCCAGCTGCAGACGCGCAAATGGCAGGACCAGACCGGCGCGGACAAGTACACGACGGAAGTCGTGCTGCAGAGATT
CCGCGGCGAACTGCAGATGCTCGACGGACGCCAGGGTGAGGGCGGCCAGGTCGGTGGTTATTCCGGCGGCGGCAGCAGCC
GCGGTTCCGATTTCGGCCAATCCGGCCCGAACGAAAGCTTCAACCGTGGCGGCGGCGCTCCCAGGGGCGGCGGTGGCGGC
GGTTCGTCGCGCGAACTGGACGATGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q1V0D2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.148

100

0.529
  ssb Vibrio cholerae strain A1552

46.961

100

0.494
  ssb Neisseria meningitidis MC58

39.13

100

0.419
  ssb Neisseria gonorrhoeae MS11

38.547

100

0.401