Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   IRJ22_RS01985 Genome accession   NZ_CP064092
Coordinates   384430..384660 (-) Length   76 a.a.
NCBI ID   WP_237562985.1    Uniprot ID   -
Organism   Bacillus licheniformis strain C5     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 379430..389660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS01955 - 379662..379790 (+) 129 Protein_391 hypothetical protein -
  IRJ22_RS01960 mecA 379772..380410 (+) 639 WP_009328831.1 adaptor protein MecA Regulator
  IRJ22_RS01965 - 380569..381585 (+) 1017 WP_011197770.1 tripartite tricarboxylate transporter substrate binding protein -
  IRJ22_RS01970 - 381688..382143 (+) 456 WP_009328829.1 tripartite tricarboxylate transporter TctB family protein -
  IRJ22_RS01975 - 382166..383671 (+) 1506 WP_016885905.1 tripartite tricarboxylate transporter permease -
  IRJ22_RS01980 - 383691..384407 (-) 717 WP_009328827.1 response regulator -
  IRJ22_RS01985 micB 384430..384660 (-) 231 WP_237562985.1 sensor histidine kinase Regulator
  IRJ22_RS01990 - 384633..386015 (-) 1383 WP_237562984.1 PAS domain-containing protein -
  IRJ22_RS01995 coiA 386133..387281 (+) 1149 WP_161658291.1 competence protein CoiA family protein Machinery gene
  IRJ22_RS02000 pepF 387494..389323 (+) 1830 WP_282334326.1 oligoendopeptidase F Regulator
  IRJ22_RS02005 - 389380..389547 (-) 168 WP_009328823.1 hypothetical protein -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8201.26 Da        Isoelectric Point: 4.7164

>NTDB_id=441539 IRJ22_RS01985 WP_237562985.1 384430..384660(-) (micB) [Bacillus licheniformis strain C5]
MSDGADHILIEVEDSGDGIPEGEQERIFQKFYSTKTANHRGLGLFLVKEAVNALNGQIKADKSDLGGALFTVVIPK

Nucleotide


Download         Length: 231 bp        

>NTDB_id=441539 IRJ22_RS01985 WP_237562985.1 384430..384660(-) (micB) [Bacillus licheniformis strain C5]
TTGTCAGACGGTGCAGATCACATATTAATTGAAGTCGAAGACTCGGGAGACGGTATTCCCGAGGGGGAACAGGAGCGGAT
CTTTCAAAAGTTTTATTCGACAAAAACGGCAAACCACCGCGGCCTCGGCCTCTTTTTAGTTAAAGAAGCCGTCAATGCGT
TAAACGGGCAAATTAAAGCGGACAAAAGCGACCTTGGCGGAGCATTGTTTACTGTCGTGATACCAAAATAG

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(6-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

38.272

100

0.408