Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   IPZ77_RS20615 Genome accession   NZ_CP064057
Coordinates   4531319..4532383 (+) Length   354 a.a.
NCBI ID   WP_234389904.1    Uniprot ID   -
Organism   Streptomyces sp. XC 2026     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4526319..4537383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPZ77_RS20595 (IPZ77_20595) - 4526361..4526816 (+) 456 WP_200367286.1 GNAT family N-acetyltransferase -
  IPZ77_RS20600 (IPZ77_20600) - 4526859..4528604 (+) 1746 WP_200367288.1 pyruvate dehydrogenase -
  IPZ77_RS20605 (IPZ77_20605) - 4528688..4529302 (+) 615 WP_200367290.1 Uma2 family endonuclease -
  IPZ77_RS20610 (IPZ77_20610) dnaG 4529312..4531225 (+) 1914 WP_200367292.1 DNA primase -
  IPZ77_RS20615 (IPZ77_20615) rpoS 4531319..4532383 (+) 1065 WP_234389904.1 RNA polymerase sigma factor Regulator
  IPZ77_RS20620 (IPZ77_20620) - 4532403..4533842 (-) 1440 WP_030726043.1 FGGY-family carbohydrate kinase -
  IPZ77_RS20625 (IPZ77_20625) - 4533910..4534722 (-) 813 WP_200367296.1 DeoR/GlpR family DNA-binding transcription regulator -
  IPZ77_RS20630 (IPZ77_20630) - 4534809..4536212 (-) 1404 WP_200367298.1 SLC13 family permease -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 39634.62 Da        Isoelectric Point: 10.4374

>NTDB_id=441504 IPZ77_RS20615 WP_234389904.1 4531319..4532383(+) (rpoS) [Streptomyces sp. XC 2026]
MPLVAGQPPTRRSRSPWRSPVSPVQSQILDVPAPVRVRKPPAPTASASGASADLFRQYLREIGRIPLLTAAEEVELARRI
EAGLFAEERLAAAHGAQRRDPGLALDLDQLVVRGRRAKRQLIEANLRLVVSVAKRYIGRGLTMLDLVQEGNLGLIRAVEK
FDYARGFKFSTYATWWIRQAMSRAIADQARTIRVPVHVVELINRVVRVQRRVLQERGYEPSPAEVGVLLGLTAARVTEIL
RLAQDPISLQSPVGEEDDVNLGDLIEDVDIPSPAESAAFLLLREQLEAVLSTLGDRERRVVELRYGLTDGRPRTLEEIGR
LFGVTRERIRQIEHKTLGKLRDHAYANQLRGYLD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=441504 IPZ77_RS20615 WP_234389904.1 4531319..4532383(+) (rpoS) [Streptomyces sp. XC 2026]
ATGCCTCTCGTGGCCGGACAGCCCCCCACGCGCCGGTCGCGATCACCGTGGAGGTCGCCCGTGTCGCCCGTGCAGAGCCA
GATCCTTGATGTTCCGGCACCGGTTCGGGTCCGGAAGCCACCCGCACCAACGGCGTCGGCGTCGGGCGCGTCGGCCGACC
TCTTCCGGCAGTATCTGCGGGAGATCGGCCGCATTCCGCTCCTGACGGCGGCGGAGGAAGTGGAGCTGGCCCGCCGGATC
GAGGCCGGGCTGTTCGCCGAGGAGCGCCTGGCGGCGGCCCACGGCGCGCAGCGGCGCGACCCCGGGCTCGCCCTGGACCT
CGACCAGCTCGTGGTCCGCGGCCGGCGCGCGAAGCGGCAGCTGATCGAGGCGAACCTGCGGCTGGTCGTCTCCGTCGCCA
AGCGGTACATCGGGCGCGGGCTGACGATGCTGGATCTGGTCCAGGAGGGCAATCTGGGGCTGATCCGGGCGGTGGAGAAG
TTCGACTACGCCCGGGGCTTCAAGTTCTCCACGTACGCGACCTGGTGGATCCGCCAGGCCATGTCGCGGGCGATCGCCGA
CCAGGCCCGCACGATACGCGTCCCGGTGCATGTGGTGGAGCTGATCAACCGGGTGGTGCGGGTCCAGCGCCGGGTCCTTC
AGGAGCGCGGCTACGAGCCGTCCCCGGCCGAGGTCGGCGTCCTGCTCGGGCTGACGGCGGCCCGGGTGACGGAGATCCTG
CGGCTCGCCCAGGACCCGATCTCCCTCCAGTCCCCGGTGGGGGAGGAGGACGACGTCAATCTGGGCGACCTGATCGAGGA
CGTGGACATCCCCTCGCCGGCGGAGTCGGCGGCGTTCCTGCTGCTGCGGGAGCAGCTGGAGGCGGTGCTGTCCACGCTGG
GCGACCGGGAGCGGCGGGTGGTCGAGCTGCGCTACGGCCTGACGGACGGGCGGCCCCGGACGCTGGAGGAGATCGGCAGG
CTGTTCGGCGTGACGCGTGAACGCATCCGGCAGATCGAGCACAAGACGCTGGGCAAACTGCGCGACCACGCGTACGCCAA
CCAGCTGCGCGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(53-86)

Sigma-70 region 3 (Sigma70_r3)

(200-276)

Sigma-70 region 2 (Sigma70_r2)

(121-190)

Sigma-70, region 4 (Sigma70_r4)

(289-341)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

42.953

84.181

0.362