Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HH306_RS10545 Genome accession   NZ_CP052759
Coordinates   2233115..2233750 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain LYT4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2228115..2238750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH306_RS10530 - 2228821..2230065 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  HH306_RS10535 - 2230153..2230686 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  HH306_RS10540 comA 2230817..2233042 (+) 2226 WP_023115230.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HH306_RS10545 exbB 2233115..2233750 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HH306_RS10550 - 2233747..2234187 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  HH306_RS10555 lpxK 2234187..2235185 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  HH306_RS10560 - 2235223..2235408 (+) 186 WP_003091157.1 Trm112 family protein -
  HH306_RS10565 kdsB 2235408..2236172 (+) 765 WP_003106922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HH306_RS10570 - 2236172..2236636 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  HH306_RS10575 murB 2236633..2237652 (+) 1020 WP_033981451.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=441486 HH306_RS10545 WP_003091163.1 2233115..2233750(+) (exbB) [Pseudomonas aeruginosa strain LYT4]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=441486 HH306_RS10545 WP_003091163.1 2233115..2233750(+) (exbB) [Pseudomonas aeruginosa strain LYT4]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCTTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81