Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   HHK01_RS08795 Genome accession   NZ_CP052135
Coordinates   1801704..1802309 (+) Length   201 a.a.
NCBI ID   WP_170007438.1    Uniprot ID   -
Organism   Bacillus fonticola strain CS13     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1796704..1807309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHK01_RS08765 - 1796893..1797681 (-) 789 WP_170007432.1 ribonuclease HII -
  HHK01_RS08770 - 1797776..1798852 (-) 1077 WP_170007433.1 hypothetical protein -
  HHK01_RS08775 - 1798950..1799558 (-) 609 WP_170007434.1 YppG family protein -
  HHK01_RS08780 - 1799649..1800014 (-) 366 WP_170007435.1 DUF1798 family protein -
  HHK01_RS08785 - 1800051..1800302 (-) 252 WP_170007436.1 hypothetical protein -
  HHK01_RS08790 - 1800623..1801624 (-) 1002 WP_170007437.1 DUF2515 family protein -
  HHK01_RS08795 recU 1801704..1802309 (+) 606 WP_170007438.1 Holliday junction resolvase RecU Machinery gene
  HHK01_RS08800 - 1802356..1804998 (+) 2643 WP_170007439.1 transglycosylase domain-containing protein -
  HHK01_RS08805 - 1805064..1805555 (-) 492 WP_170007440.1 YpoC family protein -
  HHK01_RS08810 nth 1805552..1806217 (-) 666 WP_170007441.1 endonuclease III -
  HHK01_RS08815 - 1806230..1806937 (-) 708 WP_170007442.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23093.32 Da        Isoelectric Point: 9.6237

>NTDB_id=441443 HHK01_RS08795 WP_170007438.1 1801704..1802309(+) (recU) [Bacillus fonticola strain CS13]
MSIRYPNGKPYKGSLSTPKQRESTHRYGNRGKTLEDDLNATNHYYREHGIAIVHKKPTPIQVVSVDYPKRSAAVIKEAYF
RQPSTTDYNGVYKGLYLDFEAKETTGKTAFPLANIHEHQIGHMKQVLHQSGVCFFILRFTATDEVYYMPGYVVITYWERM
VAGGRKSMKKEEVERDGYKIPLGLSPRVDYIKIVDELHSPS

Nucleotide


Download         Length: 606 bp        

>NTDB_id=441443 HHK01_RS08795 WP_170007438.1 1801704..1802309(+) (recU) [Bacillus fonticola strain CS13]
ATGTCTATTCGTTATCCGAACGGGAAGCCGTATAAAGGATCTTTATCTACTCCAAAACAAAGGGAGTCTACACACCGTTA
CGGAAATCGAGGAAAGACCCTCGAAGATGACTTAAACGCCACGAACCATTATTATAGGGAACATGGGATTGCCATCGTTC
ACAAGAAACCGACCCCTATTCAAGTGGTATCAGTCGATTATCCAAAACGAAGTGCGGCGGTGATTAAAGAAGCGTACTTT
CGACAACCATCCACTACAGACTATAATGGGGTATACAAGGGCCTCTACCTAGACTTTGAGGCGAAAGAAACGACTGGGAA
AACGGCATTTCCCCTTGCCAATATTCACGAACATCAGATTGGTCACATGAAGCAAGTCCTTCACCAAAGCGGGGTGTGCT
TTTTCATCCTTCGTTTCACTGCCACTGATGAGGTCTATTATATGCCAGGGTATGTGGTCATCACATATTGGGAACGAATG
GTGGCCGGTGGTAGAAAATCAATGAAAAAAGAAGAGGTCGAACGAGATGGTTACAAAATCCCTCTCGGCTTATCTCCTCG
GGTGGACTACATTAAAATTGTTGATGAGCTACATAGCCCGTCATAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

57.426

100

0.577