Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   HHK01_RS07930 Genome accession   NZ_CP052135
Coordinates   1607870..1610014 (-) Length   714 a.a.
NCBI ID   WP_170007285.1    Uniprot ID   -
Organism   Bacillus fonticola strain CS13     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1602870..1615014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHK01_RS07915 - 1604311..1606440 (-) 2130 WP_170007283.1 S-layer homology domain-containing protein -
  HHK01_RS07920 - 1606662..1607396 (+) 735 WP_170007284.1 hypothetical protein -
  HHK01_RS07925 - 1607549..1607746 (+) 198 WP_228027511.1 superinfection immunity protein -
  HHK01_RS07930 clpC 1607870..1610014 (-) 2145 WP_170007285.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  HHK01_RS07935 pepF 1610583..1612379 (-) 1797 WP_228027512.1 oligoendopeptidase F -
  HHK01_RS07940 - 1612869..1613954 (-) 1086 WP_228027513.1 YeiH family protein -

Sequence

Protein


Download         Length: 714 a.a.        Molecular weight: 79484.69 Da        Isoelectric Point: 5.6567

>NTDB_id=441439 HHK01_RS07930 WP_170007285.1 1607870..1610014(-) (clpC) [Bacillus fonticola strain CS13]
MLCQVCQQNQASINVVTQVNQEKSEVKMCRSCFEKQQAKHTTPSGFSGGFPFDELFKSIDAANGSSFAMKQPPTSPSTQG
GKGGSGLLDQFGRNVTDQARNGQIDPVIGRDKEVERVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKMVATDVPSKLL
NKELYVMDVASLTAGTGIRGSFEERLKAIIHELQTRGNVILFIDEIHQLVGAGAAEGSMDAGNILKPALARGELQVIGAT
TLKEYRQIEKDAALERRFQPITVKEPTSAEAFEILKGLQSKYEAYHQVHYTEEALKACVALSDRYIQDRFLPDKAIDLLD
EAGSKVNLLSEGKETATLQKKLTDLRNKKEEATRNERYEEAAKLRDQELSLMKELQADEENKRKGVVDQEFIMSLIESKT
GIPVGKLQENEKAKMKHLEQNLAGKVIGQEEAVRKVTKAIRRSRAGLKSKHRPIGSFLFVGPTGIGKTELSKSLAEELFG
SKEAMIRLDMSEYMEKHSTSKLIGSPPGYVGHDEAGQLTEQVRRNPYSLILLDEIEKAHPDVQHMFLQILEDGRLTDSQG
RTVSFKDTVLIMTSNAGVTEKKKATVGFNSVEEDLKKETNILESLGSYFKPEFLNRFDSIIEFNSLEKDHLLKILDLMLE
ELVGKLQEQGIDITIQDEAKEKLIEWGYHPAFGARPLRRIIQEQLEDQIADVLLEETASNQLVVAVEEDKIIVK

Nucleotide


Download         Length: 2145 bp        

>NTDB_id=441439 HHK01_RS07930 WP_170007285.1 1607870..1610014(-) (clpC) [Bacillus fonticola strain CS13]
ATGTTGTGTCAAGTATGCCAGCAAAATCAAGCAAGTATTAATGTGGTTACCCAAGTCAATCAAGAAAAGTCGGAAGTGAA
AATGTGCCGTTCTTGTTTTGAAAAGCAACAGGCTAAACATACTACGCCTTCTGGTTTTAGTGGTGGCTTCCCGTTTGATG
AACTATTTAAAAGCATTGACGCAGCAAATGGTTCCTCATTTGCTATGAAACAACCCCCAACTTCCCCGTCTACTCAAGGT
GGAAAAGGTGGAAGTGGACTATTGGATCAATTTGGTCGAAACGTAACGGATCAAGCTAGAAATGGACAAATTGATCCTGT
TATTGGTCGCGATAAAGAAGTGGAAAGAGTTATTGAAATTTTAAATAGACGCAATAAAAATAACCCTGTTCTCATTGGGG
AACCAGGGGTAGGGAAGACCGCTATTGCAGAAGGACTAGCACTTAAAATGGTTGCCACAGATGTGCCGTCTAAACTGTTG
AATAAAGAGCTATACGTGATGGACGTTGCTTCTTTAACAGCGGGTACGGGTATAAGAGGTTCCTTTGAGGAGCGCCTGAA
AGCGATTATTCATGAGCTACAAACGAGAGGAAATGTTATTTTATTTATAGATGAGATTCATCAACTAGTTGGTGCGGGTG
CCGCAGAAGGTTCGATGGATGCAGGGAATATCTTAAAACCTGCTTTAGCCCGTGGTGAGCTACAAGTGATTGGTGCCACG
ACGTTAAAGGAATACCGTCAAATTGAAAAAGATGCCGCCCTTGAAAGACGTTTCCAACCGATCACTGTGAAGGAGCCGAC
TTCAGCGGAAGCATTCGAAATTCTAAAAGGTTTGCAGTCTAAATATGAAGCTTATCATCAAGTTCACTATACAGAGGAAG
CATTGAAAGCTTGTGTTGCTTTGTCTGATCGCTACATTCAAGACCGCTTCCTACCAGACAAAGCGATTGACTTACTGGAT
GAAGCAGGCTCTAAAGTGAACTTGTTGTCAGAAGGTAAGGAAACAGCAACTCTACAAAAGAAACTAACTGATCTTCGTAA
CAAAAAGGAAGAAGCTACACGTAATGAAAGATACGAAGAAGCAGCCAAATTACGCGATCAAGAACTATCGCTTATGAAAG
AGCTCCAAGCTGATGAAGAAAATAAAAGAAAAGGTGTCGTCGATCAAGAGTTCATTATGAGTTTGATCGAAAGTAAAACA
GGCATCCCTGTAGGAAAACTGCAGGAAAACGAAAAAGCGAAAATGAAACATCTTGAACAAAACCTTGCAGGAAAAGTCAT
TGGACAAGAAGAGGCCGTGCGAAAAGTGACAAAAGCAATTCGTAGAAGTCGTGCTGGTCTGAAGTCCAAGCACCGTCCGA
TCGGATCCTTCTTATTCGTTGGACCAACTGGTATCGGGAAAACAGAACTATCGAAGTCACTAGCCGAAGAACTGTTCGGG
TCAAAAGAGGCCATGATTCGTCTCGATATGAGTGAATACATGGAGAAACACTCGACTTCAAAATTAATCGGTTCCCCTCC
TGGATACGTAGGACACGACGAAGCGGGGCAACTAACAGAACAGGTAAGACGCAATCCGTACAGTCTTATTTTGTTGGACG
AAATCGAAAAGGCACACCCAGATGTGCAACATATGTTCCTACAAATTTTAGAAGATGGACGTTTGACAGATAGCCAAGGC
AGAACCGTAAGCTTTAAGGATACCGTTCTAATCATGACGAGCAATGCGGGTGTGACAGAGAAGAAGAAAGCGACAGTTGG
TTTCAACTCTGTAGAAGAGGACTTAAAGAAAGAAACAAACATCTTAGAGTCCTTAGGTTCCTATTTCAAACCAGAGTTCC
TCAATCGCTTTGACTCTATTATTGAATTTAACTCTTTAGAGAAAGACCATCTCCTGAAAATTTTAGACTTAATGCTGGAG
GAATTGGTTGGCAAACTACAGGAGCAAGGCATCGACATTACCATTCAGGATGAGGCAAAAGAGAAATTGATTGAATGGGG
CTACCACCCAGCATTCGGAGCGCGACCACTACGTCGGATCATTCAAGAACAGCTGGAGGACCAAATTGCGGATGTATTAC
TAGAAGAAACAGCTTCGAATCAGTTAGTAGTGGCGGTTGAAGAAGATAAAATTATTGTTAAGTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(452-620)

ATPase family associated with various cellular activities (AAA) (AAA)

(130-259)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(626-700)

AAA lid domain (AAA_lid_9)

(268-367)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.793

100

0.585
  clpE Streptococcus mutans UA159

55.288

100

0.578
  clpE Streptococcus pneumoniae TIGR4

54.966

100

0.566
  clpE Streptococcus pneumoniae D39

55.007

100

0.562
  clpE Streptococcus pneumoniae Rx1

55.007

100

0.562
  clpE Streptococcus pneumoniae R6

55.007

100

0.562
  clpC Bacillus subtilis subsp. subtilis str. 168

54.037

90.196

0.487
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.745

90.056

0.43
  clpC Streptococcus thermophilus LMD-9

44.985

92.157

0.415
  clpC Streptococcus mutans UA159

44.985

92.157

0.415
  clpC Streptococcus thermophilus LMG 18311

44.529

92.157

0.41
  clpC Streptococcus pneumoniae Rx1

45.88

86.695

0.398
  clpC Streptococcus pneumoniae D39

45.88

86.695

0.398
  clpC Streptococcus pneumoniae TIGR4

45.88

86.695

0.398