Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   H9J98_RS13555 Genome accession   NZ_CP064041
Coordinates   2879139..2879867 (+) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain XMO116     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2874139..2884867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9J98_RS13540 (H9J98_13420) clpC 2874589..2877162 (-) 2574 WP_031845974.1 ATP-dependent chaperone ClpB Regulator
  H9J98_RS13545 (H9J98_13425) pgeF 2877295..2878023 (-) 729 WP_222133720.1 peptidoglycan editing factor PgeF -
  H9J98_RS13550 (H9J98_13430) rluD 2878025..2879002 (-) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H9J98_RS13555 (H9J98_13435) comL 2879139..2879867 (+) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  H9J98_RS13560 (H9J98_13440) - 2880002..2881483 (+) 1482 WP_322783628.1 lytic transglycosylase F -
  H9J98_RS13565 (H9J98_13445) raiA 2881814..2882140 (+) 327 WP_005468590.1 ribosome-associated translation inhibitor RaiA -
  H9J98_RS13570 (H9J98_13450) pheA 2882384..2883562 (+) 1179 WP_005468591.1 prephenate dehydratase -
  H9J98_RS13575 (H9J98_13455) yjjX 2883587..2884120 (+) 534 WP_031830053.1 inosine/xanthosine triphosphatase -
  H9J98_RS13580 (H9J98_13460) trpR 2884169..2884480 (-) 312 WP_005497218.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=441436 H9J98_RS13555 WP_005460312.1 2879139..2879867(+) (comL) [Vibrio parahaemolyticus strain XMO116]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=441436 H9J98_RS13555 WP_005460312.1 2879139..2879867(+) (comL) [Vibrio parahaemolyticus strain XMO116]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGATCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCGACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAACTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATTGCAGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405