Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   HHK01_RS04160 Genome accession   NZ_CP052135
Coordinates   843778..844107 (-) Length   109 a.a.
NCBI ID   WP_170006543.1    Uniprot ID   -
Organism   Bacillus fonticola strain CS13     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 838778..849107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHK01_RS04135 tapA 839051..840115 (+) 1065 WP_228027652.1 amyloid fiber anchoring/assembly protein TapA -
  HHK01_RS04140 sipW 840235..840816 (+) 582 WP_170006539.1 signal peptidase I SipW -
  HHK01_RS04145 - 840892..841599 (+) 708 WP_170006540.1 TasA family protein -
  HHK01_RS04150 - 841660..842469 (+) 810 WP_170006541.1 TasA family protein -
  HHK01_RS04155 - 842602..843612 (+) 1011 WP_228027653.1 hypothetical protein -
  HHK01_RS04160 sinR 843778..844107 (-) 330 WP_170006543.1 helix-turn-helix domain-containing protein Regulator
  HHK01_RS04165 - 844290..845009 (+) 720 WP_170006544.1 sulfite exporter TauE/SafE family protein -
  HHK01_RS15740 - 845106..845234 (-) 129 WP_265575555.1 hypothetical protein -
  HHK01_RS04170 - 845216..847336 (-) 2121 WP_170006545.1 catalase -
  HHK01_RS04175 - 847461..847994 (+) 534 WP_322619390.1 histidine phosphatase family protein -
  HHK01_RS04180 - 848042..849019 (-) 978 WP_170006547.1 nitronate monooxygenase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 12538.16 Da        Isoelectric Point: 4.6642

>NTDB_id=441430 HHK01_RS04160 WP_170006543.1 843778..844107(-) (sinR) [Bacillus fonticola strain CS13]
MIGERIKKYRLQKEMSLSELAESAGVAKSYLSSIERNLQSNPSIQFLEKISAELGVTVNILLHDEPSEEEGKELDSEWTT
LVREAMSSGISKEQFKEFLEFNRWKLNNQ

Nucleotide


Download         Length: 330 bp        

>NTDB_id=441430 HHK01_RS04160 WP_170006543.1 843778..844107(-) (sinR) [Bacillus fonticola strain CS13]
ATGATTGGTGAACGAATAAAAAAATACCGCCTACAAAAAGAGATGTCATTATCTGAACTGGCAGAAAGTGCTGGAGTGGC
AAAATCATACTTGAGCTCGATTGAACGAAACCTCCAATCTAACCCTTCTATTCAATTTTTAGAAAAAATATCTGCCGAGC
TAGGTGTCACTGTCAACATTTTGCTGCATGATGAACCGAGTGAAGAGGAAGGCAAAGAGTTGGATTCGGAATGGACAACA
CTCGTTCGAGAAGCCATGAGCTCCGGAATCTCAAAAGAACAATTTAAGGAATTCCTTGAATTTAATAGGTGGAAATTGAA
CAATCAATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-59)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

65.714

96.33

0.633