Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HHK01_RS00660 Genome accession   NZ_CP052135
Coordinates   119989..120282 (-) Length   97 a.a.
NCBI ID   WP_194241289.1    Uniprot ID   -
Organism   Bacillus fonticola strain CS13     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 114989..125282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHK01_RS00630 holB 115413..116420 (+) 1008 WP_170005956.1 DNA polymerase III subunit delta' -
  HHK01_RS00635 - 116413..117225 (+) 813 WP_170005957.1 stage 0 sporulation family protein -
  HHK01_RS00640 yabA 117253..117612 (+) 360 WP_170005958.1 DNA replication initiation control protein YabA -
  HHK01_RS00645 - 118021..118779 (+) 759 WP_170005959.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  HHK01_RS00650 - 118775..119026 (+) 252 WP_407646942.1 GIY-YIG nuclease family protein -
  HHK01_RS00655 rsmI 119051..119929 (+) 879 WP_170005961.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HHK01_RS00660 abrB 119989..120282 (-) 294 WP_194241289.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  HHK01_RS00665 metG 120806..122785 (+) 1980 WP_170005963.1 methionine--tRNA ligase -
  HHK01_RS00670 - 122910..123677 (+) 768 WP_170005964.1 TatD family hydrolase -
  HHK01_RS00675 - 123906..125108 (+) 1203 WP_170005965.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 11025.79 Da        Isoelectric Point: 5.2789

>NTDB_id=441428 HHK01_RS00660 WP_194241289.1 119989..120282(-) (abrB) [Bacillus fonticola strain CS13]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQITGEISDDNATFAEGKLILSREG
AEKLIEEIRTRFETNKA

Nucleotide


Download         Length: 294 bp        

>NTDB_id=441428 HHK01_RS00660 WP_194241289.1 119989..120282(-) (abrB) [Bacillus fonticola strain CS13]
ATTAATATGAAATCAACTGGTATTGTACGTAAAGTAGACGAATTAGGCCGCGTGGTGATTCCGATTGAACTTCGTCGTAC
TCTCGGTATCGCTGAGAAGGATGCTTTAGAGATTTATGTAGATGACGAAAAAATTATATTGAAAAAATATAAGCCGAATA
TGACATGCCAAATCACCGGTGAGATTTCCGATGACAACGCAACTTTTGCAGAAGGAAAACTTATTCTTAGCCGTGAAGGT
GCAGAAAAACTAATCGAAGAAATCCGCACAAGATTTGAAACAAACAAAGCGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

80.208

98.969

0.794