Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   HHK01_RS00020 Genome accession   NZ_CP052135
Coordinates   3210..4325 (+) Length   371 a.a.
NCBI ID   WP_170005855.1    Uniprot ID   -
Organism   Bacillus fonticola strain CS13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHK01_RS00005 dnaA 1..1356 (+) 1356 WP_170005852.1 chromosomal replication initiator protein DnaA -
  HHK01_RS00010 dnaN 1710..2843 (+) 1134 WP_170005853.1 DNA polymerase III subunit beta -
  HHK01_RS00015 yaaA 2974..3195 (+) 222 WP_170005854.1 S4 domain-containing protein YaaA -
  HHK01_RS00020 recF 3210..4325 (+) 1116 WP_170005855.1 DNA replication/repair protein RecF Machinery gene
  HHK01_RS00025 remB 4408..4650 (+) 243 WP_170005856.1 extracellular matrix regulator RemB -
  HHK01_RS00030 gyrB 4662..6584 (+) 1923 WP_170005857.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  HHK01_RS00035 gyrA 6731..9220 (+) 2490 WP_170005858.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 42727.00 Da        Isoelectric Point: 8.6335

>NTDB_id=441424 HHK01_RS00020 WP_170005855.1 3210..4325(+) (recF) [Bacillus fonticola strain CS13]
MFIEELSLRNYRNYENVSLSFRNKVNVLIGENAQGKTNVMESIYVLAMAKSHRTSTDKDLIQWDKEYAKIKGTIQKKEDR
IPMELVLSKKGKKAKVNHLEQAKLSRYVGHFNVVMFAPEDLTIVKGSPQVRRRFLDMELGQVSPIYLHTLGQYMKVLQQR
NSLLKKYGRQPSKLEEMYDVYTEQLVQCAVPIMAKRFQFIRLLETWAAPIHAGITRDKEALRIFYKPSVDVSAESDLTMI
EAALRETFVKKREREWERGVTLAGPHRDDLTFSINDRDVQTFGSQGQQRTTALSVKLAEIELIHGEIGEYPVLLLDDVLS
ELDDHRQSHLLHTIQGKVQTFVTTTSTEGIHHETLEEAETFHVHQGKVTKT

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=441424 HHK01_RS00020 WP_170005855.1 3210..4325(+) (recF) [Bacillus fonticola strain CS13]
ATGTTTATTGAAGAGCTAAGCTTGCGAAACTACCGAAACTACGAAAATGTCTCGCTATCGTTTCGCAATAAAGTAAATGT
CTTAATCGGGGAAAATGCTCAAGGAAAAACCAATGTCATGGAGTCCATTTACGTTCTAGCTATGGCAAAATCTCATCGAA
CGTCTACGGATAAAGATTTAATTCAATGGGACAAAGAGTATGCTAAAATAAAAGGGACTATCCAAAAAAAAGAAGATCGT
ATACCAATGGAACTTGTGCTTAGCAAAAAGGGGAAAAAAGCGAAAGTTAATCACCTAGAGCAAGCAAAGCTGAGTCGTTA
TGTTGGGCACTTTAATGTCGTCATGTTTGCCCCAGAAGATCTCACCATCGTAAAAGGGAGTCCACAAGTGCGTAGAAGAT
TTTTAGATATGGAACTTGGCCAAGTGTCACCTATCTATCTACACACTTTGGGGCAATATATGAAGGTGTTACAACAACGC
AACTCACTCCTAAAAAAATACGGAAGACAACCGAGTAAACTGGAAGAAATGTATGATGTCTACACAGAGCAACTCGTACA
ATGTGCAGTTCCTATTATGGCGAAACGTTTTCAGTTTATACGTTTATTAGAAACTTGGGCCGCTCCTATTCATGCTGGCA
TCACACGCGATAAAGAAGCGTTACGAATCTTCTACAAACCCAGTGTGGATGTATCAGCGGAATCAGATTTGACGATGATA
GAAGCAGCATTAAGAGAAACGTTTGTAAAAAAAAGAGAACGAGAATGGGAACGTGGCGTAACGCTAGCAGGTCCGCATCG
AGACGACCTTACCTTTTCGATTAATGATCGGGATGTTCAAACGTTTGGTTCACAAGGGCAGCAACGCACCACAGCTCTAT
CAGTAAAGCTGGCTGAAATCGAGTTAATCCATGGAGAAATTGGGGAATATCCAGTGTTGCTTTTGGATGATGTGTTGTCA
GAACTTGATGATCACAGACAGTCTCATCTTCTTCATACCATCCAAGGGAAAGTCCAGACATTTGTGACGACAACGAGCAC
TGAAGGCATTCATCATGAAACATTAGAAGAAGCAGAAACGTTTCATGTTCACCAAGGGAAAGTAACGAAAACTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

65.135

99.73

0.65