Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   B739_RS05415 Genome accession   NC_018609
Coordinates   1181338..1182369 (+) Length   343 a.a.
NCBI ID   WP_014938051.1    Uniprot ID   -
Organism   Riemerella anatipestifer RA-CH-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1176338..1187369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B739_RS05395 (B739_1096) - 1176536..1177204 (+) 669 WP_014938047.1 succinate dehydrogenase cytochrome b subunit -
  B739_RS05400 (B739_1097) - 1177267..1179279 (+) 2013 WP_014938048.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  B739_RS05405 (B739_1098) - 1179303..1180073 (+) 771 WP_014938049.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  B739_RS05410 (B739_1099) dinB 1180159..1181241 (+) 1083 WP_014938050.1 DNA polymerase IV -
  B739_RS05415 (B739_1100) recA 1181338..1182369 (+) 1032 WP_014938051.1 recombinase RecA Machinery gene
  B739_RS05420 (B739_1101) - 1182514..1184130 (+) 1617 WP_014615124.1 CTP synthase -
  B739_RS05425 (B739_1102) yidC 1184214..1186004 (+) 1791 WP_013446914.1 membrane protein insertase YidC -
  B739_RS05430 (B739_1103) - 1186108..1186692 (-) 585 WP_014938052.1 ribonuclease HII -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36840.12 Da        Isoelectric Point: 6.0810

>NTDB_id=44142 B739_RS05415 WP_014938051.1 1181338..1182369(+) (recA) [Riemerella anatipestifer RA-CH-1]
MAKTETTSPNDDKKKALAAVLEKLDKTYGKGTVMKLGDGTVDHNIEVIPSGSLGLDLALGVGGYPKGRIVEIYGPESSGK
TTLTLHAIAEAQKAGGTAAFIDAEHAFDMHYAEKLGINLEELIVSQPDNGEQALEIADSLIRSGGVDIVVVDSVAALTPK
AEIDGDMGDSKMGLHARLMSQALRKLTSSISKTKCTVIFINQLRDKIGVMFGSPETTTGGNALKFYASVRIDIRRSLSDT
GKIKDKSGEVIGNRTKVKVVKNKVAPPFKSAEFDIMYGEGVSKVGEILDVATDLDIIQKSGSWFSYQDTKLGQGRDTVKE
LIKDNPELAEELEAKIREKLQAK

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=44142 B739_RS05415 WP_014938051.1 1181338..1182369(+) (recA) [Riemerella anatipestifer RA-CH-1]
ATGGCAAAGACTGAAACAACAAGTCCTAACGATGATAAAAAAAAGGCATTAGCAGCCGTATTAGAAAAACTAGATAAAAC
CTACGGTAAAGGTACCGTTATGAAACTAGGTGATGGTACGGTAGACCATAATATAGAGGTGATTCCATCAGGTTCTTTAG
GGCTAGATTTGGCTTTAGGAGTAGGCGGTTATCCTAAGGGGAGAATTGTAGAAATCTACGGTCCAGAGTCTTCTGGTAAA
ACTACATTAACGCTTCACGCAATCGCAGAAGCTCAAAAAGCAGGGGGAACTGCCGCATTTATAGATGCAGAACACGCTTT
TGATATGCACTATGCCGAAAAATTAGGTATCAATCTAGAAGAACTTATCGTGTCTCAACCAGATAATGGAGAGCAGGCAT
TAGAAATTGCAGATAGCCTTATCCGTTCTGGAGGAGTGGATATTGTAGTGGTGGACTCTGTAGCGGCACTTACGCCTAAA
GCAGAGATTGATGGTGATATGGGAGATTCTAAAATGGGTCTTCACGCAAGACTGATGTCTCAAGCACTTAGAAAGTTGAC
CTCTTCTATTTCTAAAACAAAATGTACTGTGATTTTCATCAATCAGTTAAGAGATAAGATTGGAGTAATGTTTGGTAGTC
CTGAAACAACAACGGGAGGTAACGCTCTTAAATTCTATGCTTCGGTAAGGATAGATATCAGACGCTCGTTGAGTGATACA
GGTAAGATTAAAGATAAATCTGGCGAAGTTATAGGTAACCGAACTAAAGTAAAAGTGGTTAAAAATAAAGTAGCTCCACC
ATTTAAGAGTGCTGAGTTTGATATTATGTATGGGGAAGGTGTGTCTAAAGTTGGTGAGATTTTAGATGTGGCTACAGATT
TAGATATTATCCAAAAGAGTGGTTCTTGGTTCAGTTATCAGGACACAAAGCTAGGACAAGGGCGTGATACGGTAAAGGAA
CTCATCAAAGATAATCCTGAACTTGCAGAAGAGCTAGAAGCAAAAATCAGAGAAAAATTACAAGCTAAATAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(15-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

99.708

100

0.997
  recA Neisseria gonorrhoeae MS11

67.073

95.627

0.641
  recA Neisseria gonorrhoeae strain FA1090

67.073

95.627

0.641
  recA Glaesserella parasuis strain SC1401

63.037

100

0.641
  recA Helicobacter pylori strain NCTC11637

64.458

96.793

0.624
  recA Helicobacter pylori 26695

64.458

96.793

0.624
  recA Acinetobacter baylyi ADP1

64.072

97.376

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.157

96.793

0.621
  recA Acinetobacter baumannii D1279779

63.746

96.501

0.615
  recA Acinetobacter nosocomialis M2

63.444

96.501

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

63.609

95.335

0.606
  recA Streptococcus pyogenes NZ131

61.721

98.251

0.606
  recA Ralstonia pseudosolanacearum GMI1000

65.615

92.42

0.606
  recA Streptococcus mutans UA159

60.411

99.417

0.601
  recA Pseudomonas stutzeri DSM 10701

61.377

97.376

0.598
  recA Streptococcus thermophilus LMD-9

60.177

98.834

0.595
  recA Streptococcus thermophilus LMG 18311

60.177

98.834

0.595
  recA Streptococcus mitis NCTC 12261

62.195

95.627

0.595
  recA Streptococcus mitis SK321

62.195

95.627

0.595
  recA Vibrio cholerae strain A1552

61.027

96.501

0.589
  recA Staphylococcus aureus strain ATCC 12600

61.027

96.501

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.027

96.501

0.589
  recA Streptococcus pneumoniae R6

60.725

96.501

0.586
  recA Streptococcus pneumoniae TIGR4

60.725

96.501

0.586
  recA Streptococcus pneumoniae D39

60.725

96.501

0.586
  recA Streptococcus pneumoniae Rx1

60.725

96.501

0.586
  recA Streptococcus pneumoniae R36A

60.725

96.501

0.586
  recA Lactococcus lactis subsp. cremoris KW2

60.486

95.918

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

59.327

95.335

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.102

100

0.551

Multiple sequence alignment