Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SAMSHR1132_RS02515 Genome accession   NC_016941
Coordinates   544550..545914 (+) Length   454 a.a.
NCBI ID   WP_001085214.1    Uniprot ID   -
Organism   Staphylococcus argenteus     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 539550..550914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAMSHR1132_RS02495 (SAMSHR1132_04660) - 539559..540020 (+) 462 WP_000551760.1 CtsR family transcriptional regulator -
  SAMSHR1132_RS02500 (SAMSHR1132_04670) - 540039..540605 (+) 567 WP_000882064.1 UvrB/UvrC motif-containing protein -
  SAMSHR1132_RS02505 (SAMSHR1132_04680) - 540595..541602 (+) 1008 WP_014373784.1 protein arginine kinase -
  SAMSHR1132_RS02510 (SAMSHR1132_04690) - 541617..544073 (+) 2457 WP_000897144.1 ATP-dependent Clp protease ATP-binding subunit -
  SAMSHR1132_RS02515 (SAMSHR1132_04700) radA 544550..545914 (+) 1365 WP_001085214.1 DNA repair protein RadA Machinery gene
  SAMSHR1132_RS02520 (SAMSHR1132_04710) - 545939..547012 (+) 1074 WP_001028364.1 PIN/TRAM domain-containing protein -
  SAMSHR1132_RS02525 (SAMSHR1132_04720) gltX 547502..548956 (+) 1455 WP_001283783.1 glutamate--tRNA ligase -
  SAMSHR1132_RS02530 (SAMSHR1132_04730) cysE 549373..550020 (+) 648 WP_014373785.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49786.28 Da        Isoelectric Point: 7.0049

>NTDB_id=44142 SAMSHR1132_RS02515 WP_001085214.1 544550..545914(+) (radA) [Staphylococcus argenteus]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKTKEIAGKVQKLNSIKHETTPRVLTDSAEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKKKVLYITGEESLNQTKLRAERLDEDSSELQVLAETDLEVIYQTVK
EEQPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSVIVATASSLKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRAIIPKNNIGGWTYPEGIQVIGVTSVHEALSFALHS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=44142 SAMSHR1132_RS02515 WP_001085214.1 544550..545914(+) (radA) [Staphylococcus argenteus]
TTGGCCAAGAAAAAAGTGATTTTTGAATGTATGGCTTGTGGTTATCAATCTCCTAAATGGATGGGAAAATGTCCCAATTG
TGGTGCTTGGAATCAAATGGAGGAAATTGTTGAAAAAGCTGCCAATCCAAAGCATGGAGTAAAAACAAAAGAAATAGCTG
GTAAAGTACAAAAATTAAATAGTATTAAACATGAAACGACACCTAGAGTATTAACGGATTCTGCAGAATTCAACCGCGTA
TTAGGTGGCGGTATTGTTAGCGGATCACTGGTCCTGATAGGTGGAGATCCAGGTATTGGTAAGTCAACGTTACTTTTACA
AATTTGTGCTTCTTTATCACAAAAGAAAAAAGTGTTATATATTACTGGGGAAGAATCCCTTAATCAAACGAAACTTCGAG
CAGAGCGTTTAGATGAAGACTCTAGTGAATTACAAGTATTAGCAGAAACAGATTTAGAAGTTATATATCAGACAGTTAAA
GAAGAACAACCAGACTTACTAGTAGTTGATTCTATTCAAACGATTTATCACCCTGAAATTAGTTCGGCACCGGGCTCTGT
TTCACAAGTTCGTGAAAGTACACAAAGTTTAATGAACATTGCTAAACAAATGAATATTGCAACTTTTATTGTTGGACATG
TAACGAAAGAAGGTCAAATTGCAGGTCCTAGATTATTGGAACATATGGTAGATACAGTGCTTTATTTTGAAGGTGATGAA
CATCATGCATATCGAATTTTACGTGCTGTTAAAAACCGTTTTGGCTCTACAAATGAAATGGGTATTTTTGAAATGAAACA
AAGCGGATTAAAAGGTGTTAATAATCCGTCTGAAATGTTTTTAGAAGAACGTTCTACAAATGTTCCTGGGTCTACAATTG
TTGCAACAATGGAAGGTACAAGACCACTTTTAATAGAAGTACAAGCGCTTGTGACACCGACAACATTTAATAATCCGAGA
AGAATGGCAACGGGAATTGATCATAATCGACTTAGTTTACTAATGGCTGTTTTAGAAAAGAAAGAAAATTATTTATTACA
GCAACAAGATGCTTATATCAAAGTCGCAGGTGGTGTGAAATTAACAGAGCCAGCTGTTGATTTAAGTGTAATTGTGGCTA
CCGCATCAAGCTTAAAAGATAAAGCAGTTGATGGTTTAGATTGTTACATTGGAGAAGTTGGTTTAACGGGTGAGGTACGT
CGCGTATCTCGGATAGAGCAGCGCGTACAAGAAGCTGCAAAGTTAGGCTTCAAACGTGCAATTATTCCTAAAAATAATAT
TGGCGGATGGACATATCCAGAAGGGATTCAAGTAATTGGCGTAACTTCTGTACATGAAGCACTATCATTCGCTCTACATT
CATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-218)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.449

100

0.672
  radA Streptococcus pneumoniae Rx1

61.83

98.678

0.61
  radA Streptococcus pneumoniae D39

61.83

98.678

0.61
  radA Streptococcus pneumoniae R6

61.83

98.678

0.61
  radA Streptococcus pneumoniae TIGR4

61.83

98.678

0.61
  radA Streptococcus mitis NCTC 12261

61.83

98.678

0.61
  radA Streptococcus mitis SK321

61.83

98.678

0.61

Multiple sequence alignment