Detailed information NTG0441419

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GAS18_RS11965
• Genome accession: NZ_CP052132
• Coordinates: 2632676..2633863 (-)
• Length: 395 a.a.
• NCBI ID: WP_100555697.1
• Uniprot ID: -
• Organism: Burkholderia glumae strain HN2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2627676..2638863

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GAS18_RS11945 (GAS18_11965)	-	2627874..2628443 (+)	570	WP_017423453.1	acyloxyacyl hydrolase	-
GAS18_RS11950 (GAS18_11970)	-	2628483..2628869 (+)	387	WP_015877060.1	nuclear transport factor 2 family protein	-
GAS18_RS11955 (GAS18_11975)	leuA	2629066..2630715 (-)	1650	WP_017423452.1	2-isopropylmalate synthase	-
GAS18_RS11960 (GAS18_11980)	ybiB	2631129..2632106 (-)	978	WP_015877058.1	DNA-binding protein YbiB	-
GAS18_RS11965 (GAS18_11985)	pilA	2632676..2633863 (-)	1188	WP_100555697.1	signal recognition particle-docking protein FtsY	Machinery gene
GAS18_RS11970 (GAS18_11990)	rsmD	2634051..2634665 (+)	615	WP_035983602.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
GAS18_RS11975 (GAS18_11995)	coaD	2634776..2635276 (+)	501	WP_015877055.1	pantetheine-phosphate adenylyltransferase	-
GAS18_RS11980 (GAS18_12000)	-	2635421..2636743 (-)	1323	WP_017424335.1	TIGR00366 family protein	-
GAS18_RS11985 (GAS18_12005)	-	2637029..2637298 (+)	270	WP_015877053.1	YfhL family 4Fe-4S dicluster ferredoxin	-
GAS18_RS11990 (GAS18_12010)	hisC	2637363..2638430 (-)	1068	WP_035983605.1	histidinol-phosphate transaminase	-

Sequence

Protein

• Length: 395 a.a.
• Molecular weight: 41161.17 Da
• Isoelectric Point: 5.4803

>NTDB_id=441419 GAS18_RS11965 WP_100555697.1 2632676..2633863(-) (pilA) [Burkholderia glumae strain HN2]
MFSFFKRLIGSKADDASQDAPAADEQASAAHAPDAAGHAAAAASRPAPAPAHDTEPTASPAAPVPAAPAPAAAPAPAAVP
AAPAVEVVPPPAPEPAAKKSWIARLRSGLSKTSTSLTNVFVNTRIDDELYEELEAALLMSDAGIDATEYLLGALREKVRA
ERLSDPLQVKAALRALLVDLLAPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQRFDQSVLLAAGDTFRAAARE
QLAIWGERNNVTVVQQESGDPAAVIFDAVGAARARKIDVVMADTAGRLPTQLHLMEELRKVKRVIGKAQSDAPHEVLLVI
DANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFNAEEFADALLG

Nucleotide

• Length: 1188 bp

>NTDB_id=441419 GAS18_RS11965 WP_100555697.1 2632676..2633863(-) (pilA) [Burkholderia glumae strain HN2]
ATGTTCAGCTTCTTCAAACGATTGATCGGCTCGAAGGCCGACGACGCGTCGCAGGACGCGCCGGCGGCCGACGAGCAAGC
CAGCGCGGCTCACGCGCCGGACGCGGCCGGGCATGCCGCCGCCGCGGCGAGCCGGCCGGCGCCCGCGCCGGCACACGACA
CCGAACCCACCGCCAGCCCGGCTGCACCGGTGCCGGCCGCCCCCGCCCCTGCGGCCGCCCCCGCCCCTGCGGCCGTGCCC
GCCGCCCCCGCCGTCGAAGTCGTGCCGCCGCCCGCGCCTGAGCCGGCCGCGAAAAAATCCTGGATTGCACGACTACGCTC
CGGGCTCTCGAAGACGAGCACGAGCCTCACCAACGTGTTCGTCAATACCAGGATCGACGACGAACTCTACGAGGAGCTCG
AAGCCGCGCTGCTGATGTCCGATGCCGGCATCGACGCGACCGAATACCTGCTCGGCGCGCTGCGCGAGAAGGTGCGCGCC
GAACGCCTGAGCGATCCGCTGCAGGTGAAGGCCGCGCTGCGCGCGCTGCTCGTCGACCTGCTCGCGCCGCTCGAGAAATC
GCTGATGCTGGGCCGCGCCCAGCCGCTCGTGATGATGATCGCGGGCGTCAACGGAGCCGGCAAGACCACCAGCATCGGTA
AGCTCGCCAAGCACCTGCAGCGCTTCGACCAATCGGTGCTGCTGGCCGCCGGCGACACGTTCCGCGCGGCCGCGCGCGAG
CAGCTCGCGATCTGGGGCGAGCGCAACAACGTGACCGTGGTGCAGCAGGAAAGCGGCGATCCGGCCGCCGTGATATTCGA
TGCGGTCGGCGCCGCGCGCGCGCGCAAGATCGACGTGGTGATGGCCGACACCGCGGGCCGGTTGCCCACGCAGTTGCACC
TGATGGAGGAACTGCGCAAGGTCAAGCGCGTGATCGGCAAGGCGCAGAGCGACGCGCCGCACGAGGTGCTGCTCGTGATC
GACGCCAATACCGGCCAGAACGCGCTCGCCCAGGTGAAGGCATTCGACGACGCGCTGGGCCTGACCGGGCTCATCGTCAC
CAAGCTCGACGGCACCGCGAAGGGCGGCATTCTCGCCGCGATCGCGCGGCAGCGGCCGATACCCGTCTACTTCATCGGCG
TCGGCGAGAAGGTCGAGGACTTGCAGCCGTTCAACGCCGAGGAATTCGCCGACGCGCTGCTCGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (114-174)

• SRP54-type protein, GTPase domain (SRP54) (196-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.773	100	0.554