Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   H9K44_RS09575 Genome accession   NZ_CP064035
Coordinates   2046208..2048040 (-) Length   610 a.a.
NCBI ID   WP_248385783.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain DLM1799     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2041208..2053040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K44_RS09570 (H9K44_09560) pgsA 2045604..2046161 (-) 558 WP_005494716.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  H9K44_RS09575 (H9K44_09565) uvrC 2046208..2048040 (-) 1833 WP_248385783.1 excinuclease ABC subunit UvrC Machinery gene
  H9K44_RS09580 (H9K44_09570) letA 2048042..2048686 (-) 645 WP_005386783.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  H9K44_RS09585 (H9K44_09575) - 2049186..2051549 (+) 2364 WP_169609352.1 DNA polymerase II -
  H9K44_RS09590 (H9K44_09580) - 2051546..2052313 (-) 768 WP_169609350.1 nucleotidyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 69220.38 Da        Isoelectric Point: 9.5525

>NTDB_id=441333 H9K44_RS09575 WP_248385783.1 2046208..2048040(-) (uvrC) [Vibrio parahaemolyticus strain DLM1799]
MNPPFDSASFLKTVTHQPGVYRMYNADAVVIYVGKAKDLQKRLSSYFRKKVDSEKTRALVSNIAKIDVTVTHTETEALIL
EHNYIKQYLPKYNVLLRDDKSYPYIFISGHKHPRLSMHRGAKKRKGEYFGPYPDSGAVRETLHLLQKIFPVRQCEDTVYS
NRTRPCLMYQIGRCAGPCVSSIISDEEYAELVGFVRLFLQGKDQQVLKQLIEKMEVASQQLRFEDAAKFRDQIQAIRRVQ
EQQYVSEDSMDDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPQNTSQQEVFDSFLTQYYLSHNEARTIPSRIIL
NQELADDLEPIQKALSEVAGRKVHFHTSPTGARGRYLKLSNTNALTAITTKINHKMTINQRFKALRETLGMESIMRMECF
DISHTMGESTIASCVVFNNEGPVKQEYRRYNITGVTGGDDYAAMGQALERRYSKQLDVEKVPDIIFIDGGKGQLNRAHEI
IAQYWGDWPKRPIMIGIAKGVTRKPGLETLITVDGEEFNLPSDAPALHLIQHIRDESHNHAIAGHRAKRGKTRRTSALEG
IEGVGPKRRQALLKYMGGLQELKRASVEEIAKVPGISHSLAEIIFQALKQ

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=441333 H9K44_RS09575 WP_248385783.1 2046208..2048040(-) (uvrC) [Vibrio parahaemolyticus strain DLM1799]
GTGAATCCTCCTTTCGATTCGGCTTCCTTTCTCAAGACAGTAACTCATCAGCCCGGCGTGTACCGCATGTACAACGCCGA
TGCTGTTGTTATTTACGTCGGTAAAGCCAAAGATCTTCAAAAACGCCTTTCTAGTTACTTTCGCAAAAAAGTCGACAGTG
AAAAAACACGCGCTTTGGTGAGCAATATTGCCAAAATAGATGTCACGGTGACGCATACCGAGACAGAAGCGCTGATTCTT
GAACACAATTACATCAAGCAGTATTTACCGAAATACAACGTGCTTCTGCGTGATGATAAATCGTACCCTTATATATTCAT
TAGTGGTCATAAACATCCGAGATTGTCCATGCACCGTGGGGCCAAGAAGCGCAAAGGCGAGTATTTTGGTCCTTACCCTG
ACTCTGGGGCGGTACGAGAAACGCTACACTTGCTGCAAAAAATATTTCCTGTTAGACAGTGTGAAGATACGGTTTACTCC
AATCGAACGCGCCCTTGCTTGATGTATCAAATTGGTCGTTGCGCTGGCCCGTGTGTGAGCTCGATTATCTCAGATGAAGA
GTATGCAGAGCTGGTGGGTTTCGTCCGTCTATTTCTGCAAGGTAAAGATCAGCAAGTACTGAAGCAGTTGATAGAGAAAA
TGGAGGTTGCAAGTCAGCAACTTCGGTTTGAAGACGCGGCAAAGTTTCGTGATCAGATACAAGCGATAAGACGAGTCCAA
GAACAGCAATATGTATCGGAAGACAGCATGGATGATATGGATGTGCTGGGTTTTGCGCAAGAGAACGGCATTGCTTGCAT
CCACATATTGATGATTCGTCAGGGTAAAGTGTTAGGCAGTCGCAGTCATTTCCCTAAGATTCCTCAAAACACGAGCCAAC
AAGAGGTATTCGATAGCTTTTTGACTCAGTACTACCTGAGTCACAATGAGGCGCGGACAATCCCATCTCGAATAATACTG
AACCAAGAGTTGGCCGACGATCTCGAACCCATTCAAAAAGCACTGAGTGAAGTCGCAGGGCGTAAGGTTCATTTCCATAC
TTCTCCGACTGGTGCGAGAGGGAGATATCTTAAGCTGTCTAATACCAATGCACTTACTGCCATCACGACAAAAATCAACC
ATAAGATGACGATCAACCAACGTTTCAAAGCACTTCGCGAGACGCTGGGAATGGAGTCTATTATGAGGATGGAGTGTTTT
GATATTTCCCATACGATGGGTGAGAGCACTATCGCATCGTGTGTAGTCTTCAACAACGAAGGTCCGGTAAAGCAAGAATA
CCGACGCTATAATATTACTGGAGTCACGGGTGGCGATGATTATGCAGCGATGGGGCAGGCGTTAGAGCGTCGCTACTCAA
AGCAGTTGGACGTAGAAAAAGTCCCTGACATCATCTTTATTGATGGTGGTAAAGGTCAGTTAAATCGTGCGCATGAAATC
ATCGCCCAGTATTGGGGAGATTGGCCTAAGCGACCAATCATGATTGGTATTGCCAAAGGTGTAACACGTAAACCTGGCCT
TGAAACCTTAATTACGGTTGATGGCGAAGAGTTCAACTTACCAAGTGATGCTCCAGCCTTACACTTGATTCAACATATTC
GCGATGAGAGTCATAATCATGCGATTGCGGGTCACAGAGCGAAACGTGGTAAAACTCGACGTACAAGCGCGTTGGAGGGG
ATTGAAGGTGTTGGGCCAAAACGACGCCAAGCTTTATTGAAATACATGGGTGGATTGCAGGAACTTAAGCGCGCAAGTGT
TGAAGAAATCGCCAAAGTACCGGGAATTAGTCACTCTTTAGCAGAAATTATTTTCCAAGCATTGAAACAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(558-609)

UvrB/uvrC motif (UVR)

(205-238)

GIY-YIG catalytic domain (GIY-YIG)

(18-93)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(387-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

36.409

99.508

0.362