Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   HIN86_RS18225 Genome accession   NZ_CP051875
Coordinates   3763244..3763570 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain Ab-B004d-c     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3758244..3768570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN86_RS18205 (HIN86_18205) - 3758350..3758979 (-) 630 WP_032000767.1 FHA domain-containing protein -
  HIN86_RS18210 (HIN86_18210) gspD 3759020..3761290 (-) 2271 WP_032000768.1 type II secretion system secretin GspD -
  HIN86_RS18215 (HIN86_18215) - 3761332..3762168 (-) 837 WP_000870031.1 type II secretion system protein N -
  HIN86_RS18220 (HIN86_18220) gspN 3762168..3762911 (-) 744 WP_032000769.1 type II secretion system protein N -
  HIN86_RS18225 (HIN86_18225) hns 3763244..3763570 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  HIN86_RS18230 (HIN86_18230) - 3763765..3764205 (-) 441 WP_000661569.1 acyl-CoA thioesterase -
  HIN86_RS18235 (HIN86_18235) - 3764213..3765406 (-) 1194 WP_031999578.1 hypothetical protein -
  HIN86_RS18240 (HIN86_18240) - 3765416..3766255 (-) 840 WP_001230201.1 hypothetical protein -
  HIN86_RS18245 (HIN86_18245) - 3766264..3767031 (-) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  HIN86_RS18250 (HIN86_18250) hemC 3767036..3767953 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=441293 HIN86_RS18225 WP_000801427.1 3763244..3763570(-) (hns) [Acinetobacter baumannii strain Ab-B004d-c]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=441293 HIN86_RS18225 WP_000801427.1 3763244..3763570(-) (hns) [Acinetobacter baumannii strain Ab-B004d-c]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1