Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   HIN86_RS17075 Genome accession   NZ_CP051875
Coordinates   3513235..3514035 (-) Length   266 a.a.
NCBI ID   WP_187406181.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab-B004d-c     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3508235..3519035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN86_RS17055 (HIN86_17055) - 3509300..3509998 (-) 699 WP_000058788.1 YfgM family protein -
  HIN86_RS17060 (HIN86_17060) hisS 3510027..3511319 (-) 1293 WP_000095254.1 histidine--tRNA ligase -
  HIN86_RS17065 (HIN86_17065) ispG 3511316..3512431 (-) 1116 WP_000572095.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  HIN86_RS17070 (HIN86_17070) - 3512453..3513244 (-) 792 WP_000405163.1 helix-turn-helix domain-containing protein -
  HIN86_RS17075 (HIN86_17075) pilF 3513235..3514035 (-) 801 WP_187406181.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  HIN86_RS17080 (HIN86_17080) rlmN 3514051..3515283 (-) 1233 WP_000093084.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  HIN86_RS17085 (HIN86_17085) ndk 3515406..3515837 (-) 432 WP_031999785.1 nucleoside-diphosphate kinase -
  HIN86_RS17090 (HIN86_17090) iscX 3515951..3516151 (-) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  HIN86_RS17095 (HIN86_17095) - 3516251..3516802 (-) 552 WP_000669571.1 phosphatase PAP2 family protein -
  HIN86_RS17100 (HIN86_17100) - 3516827..3518125 (-) 1299 WP_111818380.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30018.39 Da        Isoelectric Point: 9.3928

>NTDB_id=441286 HIN86_RS17075 WP_187406181.1 3513235..3514035(-) (pilF) [Acinetobacter baumannii strain Ab-B004d-c]
MSTPKLKTMLCMGVAVALLASGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQLRIAGATLGYDQRYQALVNLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=441286 HIN86_RS17075 WP_187406181.1 3513235..3514035(-) (pilF) [Acinetobacter baumannii strain Ab-B004d-c]
TTGAGTACTCCGAAGTTGAAGACCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGGCCAGTGGTTGCCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACGCAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCTCTTGACCAAGCGTTAAGTGTCGATAGTCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAACCCAATTTAGAAAAAGCAGAACATTACTTTAAGCGTGCAATTTCATCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACGTATTTGTACCAAATGGAGCGTTATAATGATGCTATTGAGCAACTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCTTTAGTAAATCTGGGGCGAATTTATTTAAAACTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGCGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCACGCGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

98.872

100

0.989
  pilF Acinetobacter baylyi ADP1

74.615

97.744

0.729