Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   HIN86_RS01515 Genome accession   NZ_CP051875
Coordinates   326421..326948 (+) Length   175 a.a.
NCBI ID   WP_057049054.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab-B004d-c     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 321421..331948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN86_RS01500 (HIN86_01500) pilM 323974..325032 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  HIN86_RS01505 (HIN86_01505) pilN 325032..325673 (+) 642 WP_169030851.1 PilN domain-containing protein Machinery gene
  HIN86_RS01510 (HIN86_01510) pilO 325670..326410 (+) 741 WP_031999622.1 type 4a pilus biogenesis protein PilO Machinery gene
  HIN86_RS01515 (HIN86_01515) pilP 326421..326948 (+) 528 WP_057049054.1 pilus assembly protein PilP Machinery gene
  HIN86_RS01520 (HIN86_01520) pilQ 327011..329176 (+) 2166 WP_031999626.1 type IV pilus secretin PilQ family protein Machinery gene
  HIN86_RS01525 (HIN86_01525) aroK 329188..329757 (+) 570 WP_000643712.1 shikimate kinase AroK -
  HIN86_RS01530 (HIN86_01530) aroB 329786..330868 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  HIN86_RS01535 (HIN86_01535) - 330884..331759 (+) 876 WP_000218806.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19449.66 Da        Isoelectric Point: 8.9898

>NTDB_id=441259 HIN86_RS01515 WP_057049054.1 326421..326948(+) (pilP) [Acinetobacter baumannii strain Ab-B004d-c]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMTNIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=441259 HIN86_RS01515 WP_057049054.1 326421..326948(+) (pilP) [Acinetobacter baumannii strain Ab-B004d-c]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGACCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAAACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCGGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTTTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

99.429

100

0.994
  comL Acinetobacter baylyi ADP1

71.264

99.429

0.709